Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00461 ATGGCTTCTTCTCCCAAGAGCTCCATCAAAATCCATGACCACTGCGTTGTAACTCCTTCACCATCAGATCAAACTCATCTATCTCTCCCTCTCACATTCTTTGATTTGTTTTGGCTCAAGTTCCACCCAGTTGAACGCATCTTCTACTACACCCTTCCTCTTCCTCTTTCAAACCCATCATTTTTCTTTGACAAAGTGGTTCCAAAGCTCAAAGCCTCACTCTCTCACACCCTCCAACACTTCCTCCCTTTAGCTGGTAACATCGTTTGGCCTTCTGATTCCAACAAACCCTTCATCCAATTCAACCCTGGGGATGGGGTCTCATTGGTCCTAGCACAGTGTGATGATGAAAATGCAAACTTCAATCAAATATTGGAACACAATTCACCTCGTGAAGCCATGGAGTCTCGCAATTTGACACCCCACTTGGAATCATCAGATTCTTTTGCGGATGTTATCTCCCTGCAGATAACTCTGTTTCCACACAGTGGCTTTTCCATTGGTATCAGCACCCACCATGCTGTTCTTGATGGAAAATCTTCAACCTTGTTCATCAAGGCCTGGGCTTCTATATGTAAATCAGATGAAAATTCACCATCTTTGGTGCCAAAGTTGAAGCCTTTTTTGGACAGAGAAGTCATCAAGGATCCAAATGGGCTTGAAAATTTGTTTATTAACAACTGGGTAGAGATCGCATCCCAATTTGACCCTTCAGGGAACAGCAACAGGAGAAGCTTGAAGATTATGCCAAACCCATCTGAACTAATCATGGATCAATCTTTCCGAGCCACTTTCGAGCTCACACGTGGTGATTTGGAGAATCTGAAGAAAAGGGTGTTGTCCATGTGGGACATGGTGGAAGGAGCAGAACCAAATGAAGCAATTGATTCTTCAAAGCCAACAACTTTATCAACCTTTGTTATTACCTGTGCTTATGTTTCTGTCTGCATTGCCAAGGCCATTCAAGAAGCTGAAAAGGATAAACAAAAATTTGCTTTTGGGTTCACTGTGGATTGCAGGGCTAGGTGGGAACCTCCAATCCCTGAGAACTATTTTGGCAATTGTGTATGTTCTCATATAGTGGACACAGAGTCAGAGGACTTCACAAAGGAAGATGGGTTAGTCATTGTTGCTAAGAAGATTTATAGTAAAATAAAGAAATTGGATGAAAAACCTCTTGATGGAGTTGAGACACTGGTGTTTAGATTTATGGCTATGACAATTGAGGGAATTAAAGGAATGGGAGTTGCTGGGTCAACCAGGTTTGGAGTATATGGAACTGATTTTGGTTGGGGAAGGCCTTCTAAGGTGGAGATAGTATCAGTGGATAGAGGATTAACCATTGGCATGACAGAGAGAAAGGATGGGAAGGGTGGTGTTGAAGTTGGGCTTGTTCTTAATAAGCATGTGATGGATCTGTTTTCTACTTTTTTCCATGCAGGATTATGCTTTGAGTGA 1458 0.4239 MASSPKSSIKIHDHCVVTPSPSDQTHLSLPLTFFDLFWLKFHPVERIFYYTLPLPLSNPSFFFDKVVPKLKASLSHTLQHFLPLAGNIVWPSDSNKPFIQFNPGDGVSLVLAQCDDENANFNQILEHNSPREAMESRNLTPHLESSDSFADVISLQITLFPHSGFSIGISTHHAVLDGKSSTLFIKAWASICKSDENSPSLVPKLKPFLDREVIKDPNGLENLFINNWVEIASQFDPSGNSNRRSLKIMPNPSELIMDQSFRATFELTRGDLENLKKRVLSMWDMVEGAEPNEAIDSSKPTTLSTFVITCAYVSVCIAKAIQEAEKDKQKFAFGFTVDCRARWEPPIPENYFGNCVCSHIVDTESEDFTKEDGLVIVAKKIYSKIKKLDEKPLDGVETLVFRFMAMTIEGIKGMGVAGSTRFGVYGTDFGWGRPSKVEIVSVDRGLTIGMTERKDGKGGVEVGLVLNKHVMDLFSTFFHAGLCFE. 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00461 485 PANTHER - 9 482 - -
Seca1g00461 485 Gene3D - 8 240 IPR023213 -
Seca1g00461 485 Gene3D - 258 484 IPR023213 -
Seca1g00461 485 Pfam Transferase family 9 475 - -
Seca1g00461 485 SUPERFAMILY CoA-dependent acyltransferases 296 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00461 Seca-Chr1 5243133 5244590 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00461 9 478 Monolignol Biosynthesis Gene Families AT5G48930 23.750 1.72e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00461 - - gmx:100813762 661.759