Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00460 ATGGCTTCTCACATCAACAACAACATCGACAAGAACATCAAAATCCACGAGCACTGCAATGTTGCTCCTTCATCTGGAACCCAATCATCTCTTTCTCTCAATTTCTTTGACTTGTTTTGGCTCAGGTTCCATCCAGTTGAGCGCATCTTCTTCTACACCCTTCAAAATCCACAATCAAACCCATCTTTTTTCTTCAACAAACTCGTTCCAAAGCTCAAAACTTCACTCTCCCTCACCCTCCAACACTTCCTCCCTCTAGCTGGCAACATCGTTTGGCCTTCGGAATCCCCAAAACCCATTGTCAAATACACCCCTGGTGTTGATGATGGTGTTTCACTGGTGATTGCAGAGTCTGATGCTGACTTCAACCACATGTTGGAACACAACTCACCCCATGAAGCTTCAAAGTCTCGTTCTTTTGTACCCCACTTGGAATCAGCTGACTCCTTTGCTTCTGTTATTTCCCTTCAAATCACTCTGTTTCCATACAGGGGATTTAGCATCGGCATCAGCACCCACCATGCTGTTCTTGATGGGAAATCTTCAACTATGTTCATGAAGGCCTGGGCTTCTATATGTAAAACCATTGATGAATTTGAATCTGAACCACCATATTTGGTGCCAGAGTTAAAGCCTTTCCTTGACAGGGAAATCATCAAAGACAAAGATCCAAATGACATTGGCATTGCTATTGTAAATAATTGGTCTGAGTTCTTAGCTAAAATGTTCCCTTCTGAAAACAGTGACGGACGATGCTTAAAGATTCTACCTTTCCAACTAAAACTGAAGGACTCAGTTCGAGCAACGTTCGAGCTCACACGTGAAGATTTGGAGAAGATAAAGAAAAGAGTGTTATCCATGTGGGATAGAGCAGTAGTAGAAGAAGAATCAATAATCGATTATACAAAGCCAACAACTTTATCAACGTTTGTTCTCACATGTGCTTATGTGCTTGTTTGTGTTGCTAAAGCCATTCAAGGAGTTGAAAAGGAGAGAAACAAGTTTTCTTTTGCATTCACCGTGGATTGCAGGGCGAGGTTAGAGCATCCAATCCCTGATAACTATTTTGGAAACTGCGTATGGGGATATTTCGTGGATGCAAAACCAACGGATTTTACAAAGGAAGATGGGCTCTTTTTTGTTGCCAAGAGCATTCATGATCAAATCAAAGTGTTAGGTAAGGGGGGTTTTGAAGGATCCAACTCCAAGTATGGGCTTTCTAAATATAAATCTTTGGCAAGTGAAGGAGTTGAAATAATTGGAGTGGCAGGGTCAAATAGATTTGGTGTTTATGGAATTGATTTTGGTTGGGGAAGGCCTTCTAAGGTGGAGATAACATCGGTGGATAGAGGTTTAACTATTGGGTTGGCAGAGAGTAAGGGTTGGAAAGGTGGAGTTGAAGTTGGGCTCGTTCTGAATGAAAATGTGATGGATCTCTTTAGTACTTTGTTTCATGGAGGCCTATGTGATGTGATGATTGATGGGAGCAATATAGAACATAAAAATTTTGTTTAG 1515 0.4132 MASHINNNIDKNIKIHEHCNVAPSSGTQSSLSLNFFDLFWLRFHPVERIFFYTLQNPQSNPSFFFNKLVPKLKTSLSLTLQHFLPLAGNIVWPSESPKPIVKYTPGVDDGVSLVIAESDADFNHMLEHNSPHEASKSRSFVPHLESADSFASVISLQITLFPYRGFSIGISTHHAVLDGKSSTMFMKAWASICKTIDEFESEPPYLVPELKPFLDREIIKDKDPNDIGIAIVNNWSEFLAKMFPSENSDGRCLKILPFQLKLKDSVRATFELTREDLEKIKKRVLSMWDRAVVEEESIIDYTKPTTLSTFVLTCAYVLVCVAKAIQGVEKERNKFSFAFTVDCRARLEHPIPDNYFGNCVWGYFVDAKPTDFTKEDGLFFVAKSIHDQIKVLGKGGFEGSNSKYGLSKYKSLASEGVEIIGVAGSNRFGVYGIDFGWGRPSKVEITSVDRGLTIGLAESKGWKGGVEVGLVLNENVMDLFSTLFHGGLCDVMIDGSNIEHKNFV. 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00460 504 Gene3D - 262 489 IPR023213 -
Seca1g00460 504 Pfam Transferase family 13 481 - -
Seca1g00460 504 Gene3D - 9 237 IPR023213 -
Seca1g00460 504 PANTHER - 13 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00460 Seca-Chr1 5230839 5232353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00460 13 480 Monolignol Biosynthesis Gene Families AT5G48930 23.093 8.03e-18 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00460 - - gmx:100815354 645.195