Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00457 ATGGCTTTTCACATAATCAACAACAACATCAGCAAGAACATCAAAATCCATGAGCACTGCAAAGTTGCTCCTTCATCTGGAACCCAAACATCTCTTTCTCTCAATTTCTTTGACTTGTTATGGCTCAGGTTCCATCCAGTTGAGCGCATCTTTTTCTACACCCTTCAAACTCCACAATCAGACCCATCTTTTTTCTTCAACAAACTCGTTCCAAAGCTCAAAACTTCACTCTCCCTCACCCTCCAACACTTCCTCCCTCTAGCTGGCAACATAGTCTGGCCTTCAGAATCCCCAAAACCCATTGTCAAATACACTCCTGGAGTTGATGATGGTGTTTCACTGGTGATTGCAGAGTCTGATGCTGACTTCAACCACATGTTGGAACACAACTCACCCCATGAAGCTTCAAAGTCTCGTTCTTTTGTACCTCACTTGGAATCATCTGATTCCTCTGCTACTGTTATTTCCCTTCAAATCACTCTGTTTCCAAACAGGGGATTCAACATCGGCATCAGCACCCACCATGCTGTTCTTGATGGGAAATCTTCAACTATGTTCATGAAAGCCTGGGCTTCTATATGTAAAACCATTGATGAATCTGAATCTGAACCACCATCTTTGGGGCCAGAGTTAAAGCCTTTCTTTGACAGGGAAATCATCAAAGACAGAAATCCAAATGACGTTGGCATTACTCTAAAACTGAAGGACTCAGTTCGAGCAACGTTCGAGCTCACACGTGAAGATTTGGAGAAGATAAAGAAAAAGGTGTTATCCATGTGGGATAGAGCAGTAGTAGAAGAAAAGTCAATAATCAATTCTTCAAAGCCAACAACTTTATCAACGTTTGTTCTCACATGTGCTTATGTGCTTGTTTGTGTTTCTAAAGCCATTCAAGGAGTTGAAAAGGAGAGGAACAAGTTTTCTTTTGCATTCACTGTGGATTGCAGGGCAAGGTTAGAGCCTCCAATCCCTGATAACTATTTTGGAAATTGTATATGGGGCTATTTCGTGGATGCAAAACCAACAGATTTTACAAAGGAAGATGGGCTCTTTTTTGTTGCTAAGAGCATTCATGATCAAATAAAAGTGTTAGGTAAGGGGGGTTTTGAAGGATCCAATTCCATGTATGGGCTTTCTAAATATCAATCTTTGGCAAGTGAAGGAGTTGAAATAATTGGAATGGCAGGGTCAAATAGGTTTGGTGTTTATGGAATTGATTTTGGTTGGGGAAGACCTTCTAAGGTGGAGATAACATCGGTGGATAGAGGTTTAACTATTGGGTTGGCAGAGAGTAAGGGTTGGAAAGGTGGAGTTGAAGTTGGGCTCGTTCTGAATGAAAATGTGATGGATCTCTTTAGTACTCTGTTTCATGGAGGACTATGTGATGTAATGATTGATGAGATCAATATAAAACATAAAAATTTTGTTTAG 1431 0.4053 MAFHIINNNISKNIKIHEHCKVAPSSGTQTSLSLNFFDLLWLRFHPVERIFFYTLQTPQSDPSFFFNKLVPKLKTSLSLTLQHFLPLAGNIVWPSESPKPIVKYTPGVDDGVSLVIAESDADFNHMLEHNSPHEASKSRSFVPHLESSDSSATVISLQITLFPNRGFNIGISTHHAVLDGKSSTMFMKAWASICKTIDESESEPPSLGPELKPFFDREIIKDRNPNDVGITLKLKDSVRATFELTREDLEKIKKKVLSMWDRAVVEEKSIINSSKPTTLSTFVLTCAYVLVCVSKAIQGVEKERNKFSFAFTVDCRARLEPPIPDNYFGNCIWGYFVDAKPTDFTKEDGLFFVAKSIHDQIKVLGKGGFEGSNSMYGLSKYQSLASEGVEIIGMAGSNRFGVYGIDFGWGRPSKVEITSVDRGLTIGLAESKGWKGGVEVGLVLNENVMDLFSTLFHGGLCDVMIDEINIKHKNFV. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00457 476 Gene3D - 239 461 IPR023213 -
Seca1g00457 476 Gene3D - 9 238 IPR023213 -
Seca1g00457 476 PANTHER - 14 460 - -
Seca1g00457 476 SUPERFAMILY CoA-dependent acyltransferases 268 429 - -
Seca1g00457 476 Pfam Transferase family 14 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00457 Seca-Chr1 5211639 5213157 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00457 14 452 Monolignol Biosynthesis Gene Families AT5G48930 23.362 3.39e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00457 - - gmx:100815354 602.053