Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00456 ATGAAAATTGTCGAAGTTTTCAATGTAGCACCTGCTTCTGGATCAAATGAGTTATTACCTTCTAAAACATCACTTCCTCTTACCTTCTTTGATTTACTATGGTTAAGGTTACCTCCTGTTCAACGCATTTTCTTCTATGAATTTCCTCACCCAACACCACTTTTCTATGATACCCTTCTTCCAAAACTCAAACAATCCCTTTCTCTTACACTTGGCTACTTCTACCCTCTCTCTGGCTACCTCATTTGGCCCCTTCACTCTCACAAACCCATCATTGACTACACTTCAGGTGACACTGTTTCCCTCACTGTAGCTGAATCTGATGCTGATTTCAACCATCTAGCAGGCACAGATCTTTATGAAGCAACAAAAAGTCACCATCTTTTATCCCACTTGACCATATCCCATGAACAAGCCACTGTGTTGGCTCTCCAAGTCACTCTGTTTCCAAACTCTGGAATTTCAATTGGGATCACCTCGCACCATGCTGTTATGGATGGCAAAAACTCAACATCGTTTATCAAATCCTGGGCTTATCTATGCAACAGGCTAGGAGAAGATTCACCCTCTTCTTTGCCACCTGAATTGGTTCCATTCTATGATAGGAAAGTAATCAAAGACCCTTGTGAATTAGAAGCAAAATATATCAGTGATTGGTTAAAGCACGGTGGACCCAATAACAGAAGCCTCATGGTTTGGGATCTCCAAGTTCCAGAAGAGTCAATTAGAGGCTTATTCCAATTGTCTCGCTCAGATATTGAAAAGCTCAAGCAATTTGTAGTGTCCAAGCAGAAAGGGAAGAAGAACCTTCACTTGTCAACGTTTGTGTTATCTGTTGCCTTTGCATGGGTTTGCAGAGTGAAAGCAGAGGAAATTAAAAACAAGAGAGTTGTTATGGCTCTGAATATTGACTGCAGGACTCGCTTAGAGCCACCTCTTTCTCCAACTTATTTTGGAAATTGTGTTGGGGGCAAACTTGCAATTGCTGAAACAAGAGAATTATTGGGAGAAGATGGACTCATTGTGGCTGTGGAAGTATTGAATGAAGCATTGGAAACTTTGAAGGATGGAGTGCTGAAAGGAGCAGAGAATTGGTCATCATGGTTGCTTGAAGGTCTTGTTACTGATGATGTCAAGACAATTGGCACTGCTGGGTCACCAAGGTTTGAGGTTTACAGTAGTGATTTTGGTTGGGGAAGACCAAAGAAGGTGGAGATGGCGTCTATAGATAGAACTGCAGCATTTTGTCTTTCAGATAGCAAAAATGGTGATGGGGTTGAGATAGGTTTGGTGTCCAATAAAGCAGCAATGGAGACCTTTGCTTCTCTCTTTGTCAAAGGCCTTGCATCTTGA 1353 0.4176 MKIVEVFNVAPASGSNELLPSKTSLPLTFFDLLWLRLPPVQRIFFYEFPHPTPLFYDTLLPKLKQSLSLTLGYFYPLSGYLIWPLHSHKPIIDYTSGDTVSLTVAESDADFNHLAGTDLYEATKSHHLLSHLTISHEQATVLALQVTLFPNSGISIGITSHHAVMDGKNSTSFIKSWAYLCNRLGEDSPSSLPPELVPFYDRKVIKDPCELEAKYISDWLKHGGPNNRSLMVWDLQVPEESIRGLFQLSRSDIEKLKQFVVSKQKGKKNLHLSTFVLSVAFAWVCRVKAEEIKNKRVVMALNIDCRTRLEPPLSPTYFGNCVGGKLAIAETRELLGEDGLIVAVEVLNEALETLKDGVLKGAENWSSWLLEGLVTDDVKTIGTAGSPRFEVYSSDFGWGRPKKVEMASIDRTAAFCLSDSKNGDGVEIGLVSNKAAMETFASLFVKGLAS. 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00456 450 PANTHER - 2 449 - -
Seca1g00456 450 Gene3D - 1 230 IPR023213 -
Seca1g00456 450 Pfam Transferase family 22 442 - -
Seca1g00456 450 Gene3D - 237 449 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00456 Seca-Chr1 5166163 5167515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00456 43 440 Monolignol Biosynthesis Gene Families AT5G48930 25.243 5.07e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00456 - - gmx:100805184 691.419