Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00453 ATGATTAATAGCCCAAAAGAATCAGATTTTCCATTGAAACAAGAAGGTCATTCAATTAGTGATCATGAAAAAGCATCAAAAGTAGCTTCTTCATCATCAGCATCAGCATCACAATGGCCAAGATTGAAGGATCCAAGGATTGTAAGAGTATCTAGAGCCTTTGGAGGAAAAGACAGACACAGCAAAGTTTGCACAATAAGAGGATTAAGAGACAGACGTGTGAGGCTTTCAGTGCCAACTGCTATCCAACTTTATGATCTTCAAGATAGGTTAGGGCTCAATCAGCCTAGCAAGGTTGTTGATTGGTTACTTAATGCAGCTAAGCATGAAATTGATGAACTTCCACCACTTCCTAATATTCCACCACCAGGGAATAACTTCACTTTTACTAATTATCCATCTTCTCTTATTAATCAAGCTGCTGCTTCCACCTCTCATCAGCCTAATGATCAACTGTTCAACATCAATAGGGGCATTATTCATCAGTGGGAAGGTAATTCAAGTCAAAATTCAATGTGGAAATTGAGGACTAAACAAGTTTCAGGTGATATGGTTCTTGAAGAGGATGGTGCTAATAAGGAAGGGAGTAGCAATAATGAAGGTCCTTGTGCAAATGTTTTGCCAAATAATAATCTCTTGCAAAGAGCTAATCATCATCACCCTTCATTCCTTGGATTGCTAAATACTATGCCACTTGGTTACCAATGGGAGCCTTCAAGTGATGTTAATAATTCTCATCAGTTGGGAAATAACAATAATGGATTGTTCATCACAAACCAAACAGATATACAAAGCATTAATGTTGTGCCTTTTCCATCAAGTTTGTCTTTGTCAACTGGGAATTCTCAAATTCTGGTGTGTCCTCCTGGAACAACACAGTCATATTTCCCTTCACATGTTACAGGAATGGATTTGGATCCCAGACAAATCAATCATTATCAGATGTTGAGTTCTTCATCTTCAGGTTCTCATCATCAAAATCTGTTGACAAATTCTCTCAATAATCCTTCTTTCAGCCTGGCTATGATGACTCCCAAACTTCTCCATTCACCAAACAACAGCAGTGAAAGTCCATCACATAAAGATCAAGATTTCATTTCCAAGTGA 1107 0.3803 MINSPKESDFPLKQEGHSISDHEKASKVASSSSASASQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPNIPPPGNNFTFTNYPSSLINQAAASTSHQPNDQLFNINRGIIHQWEGNSSQNSMWKLRTKQVSGDMVLEEDGANKEGSSNNEGPCANVLPNNNLLQRANHHHPSFLGLLNTMPLGYQWEPSSDVNNSHQLGNNNNGLFITNQTDIQSINVVPFPSSLSLSTGNSQILVCPPGTTQSYFPSHVTGMDLDPRQINHYQMLSSSSSGSHHQNLLTNSLNNPSFSLAMMTPKLLHSPNNSSESPSHKDQDFISK. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00453 368 ProSiteProfiles TCP domain profile. 56 114 IPR017887 -
Seca1g00453 368 MobiDBLite consensus disorder prediction 347 368 - -
Seca1g00453 368 MobiDBLite consensus disorder prediction 25 39 - -
Seca1g00453 368 Pfam TCP family transcription factor 56 162 IPR017887 -
Seca1g00453 368 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 325 IPR005333 GO:0003700
Seca1g00453 368 MobiDBLite consensus disorder prediction 10 24 - -
Seca1g00453 368 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00453 Seca-Chr1 5139486 5141943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00453 39 315 TCP Transcription Factor Family AT3G02150 41.176 7.41e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca1g00453 TCP 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00453 - - gmx:100816424 444.891