LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00448	ATGATGAGCCTCTGTGTGCTACTGTTTTTTCTCGCGCTGTTGTTTCCTCTAGAGGTTAACTCATACGTCCCTGTTGATGATTATGCTGTTAACTGTGGTGACTCAAAAGATGTTACCATTTATAATCGAATCTGGGTTGGAGACGTTAGCACCAAGCAGGACTTTTCTATCATTGAACCACAAACAGGGCAACCATCTGTCAAAGCCGATGCTCTTAACCGTTTTCCAGGTAACCCAGTATTTCCGGTCGGCTCCGCACGAATCTCTCGCTCCAAATTCACATACTCCTCTGTTAATGTCACTAGCGGCCCAAAGTTCCTTCGCCTTCACTTTTATCCAACGTCATATCTTAACTTTGAACCCTACAACTCCATCTTCTCTGTCATAGCAGGCAATTTCACCCTTCTCAAAGACTTCAACGCCTCACTTTGGGTTCACGATGATGAAAAGACAATCAGCAAAGAATACTGTCTCAACGTGGAAAGAGGTGAGAGGCTAAACATAACCTTCCTTCCCAGCAATAATCACTCTGATGCTTATGCTTTTATCAACGGGATCGAGGTCGTGTCTATGCCTCCCTACCTCTATTACACTAATCTCAGTGACTCAGATTATAAATTTAAGCAAGTGGGTCATGATGATACCCCATTCCAAATTCAAAAGGACAAAGCTCTGGACACACTTTACAGAGTTAATGTTGGTGACAATCAGGTTCCACCTAGCAACGATACCGGCATGTTCCGGAATTGGGACAGTGATTATCCACGCTACTTGGAGAAGCAATATCCACTCAGTGTGTCAGCTGGCTATGCACTTCAACTCAACTATAAAAACAATACAATTCCCAATTACACTGCACCAGCCGCTGTATACTTAACGGCCCGTAGTTACGGGATGAATGCATCTGCTAAATATAATGTAACTTGGACCTTTGAAGTGGATTCACAGTTCACTTATATGGTCAGGTTACATTTCTGTGAGTTTGACCCGCTGATCCAGCGCTACGGGGATAGAGCTTTCCTGATTTTTATAGCAGAGACTTTGGCGGAGGTATACGCCGATGTGATCGGCTGGGGTGACGGATTCAACCTAGTTCCTATTCATAGGGATTATGCTGTTGTTATGTCCACGCAAGGAGACTCTAAGAAAGTCAATCTTTCAATCAAGCTACAACAAATGCCAGATATCATAACCAAATACCATGATGTCATATTGAATGGAATTGAGATTTTCAAAATTAGTGACCGAAATAACAATCTTGCCGGTCCGAATCCCGAACCTATAATTCTATCTCAATCTCATTCTCCACAGAACCCAAAGACAACCACAGTTATCGTTGTCGTGGTTGCAGTTTCAGCCCTCGTGGTAGCATCTGTTATTGGCATCATGGTTTTTCAGCGACGAAGAAGGACAAGAGGCCATAACAAGGAAGAAAACTCGACGAAGAAAAAGACTGAAGAAGGCTCATCTTTGCCATCCCGTTCGGGTCGCTACTTTACAATCCGAGAGATCAAAGCTGCCACAAACAACTTCGCCGACGTTTCCATCATCGGAGTTGGAGGGTTCGGAAACGTGTACAAGGGTTACATCGATGGAGCCACACCCGTTGCGATCAAACGTCTCAAACGGGATTCTCACCAAGGTGCCAACGAGTTCATGAACGAGATCGAGTTGCTCTCCCAGCTTCGCCACCTTCATCTGGTTTCCCTCGTTGGTTACTGCAACGACGGCGTAGAGATGATCCTCGTCTATGACTTCATGCAACGTGGCACTCTCCGCGAGTATCTCTACAACTCTGATAACAAACCCCTTTCCTGGAAACAGAGGCTCGAGATCCTATTGGGTGCAGCAAGAGGGCTGTATTATCTTCATACAGGTGCGAATCACAGGATCATCCATCGTGACGTGAAGAGCACCAACATTCTATTGGATGAAAATTGGGTGGCTAAGCTTTCTGACTTGGGATTATCCAAAGTGGGACCCACTGGAATATCCAAGACACACGTTACCACGCTTGTGAAGGGGAGCCTTGGGTATTTGGACCCGGAATATTTCAGGAGTCAAAGGTTGACTCTAAAGTCTGACGTGTACTCGTTCGGTGTGGTGCTTCTTGAGGTATTGTGTGGGAGGCCACCTATAGTTCGTACGTTGGACATGCAGAGGGAAAGCTTGGTGGATTGGGTTAGGAGATGTTATGATAAAGGAGAGATTGATCAAACTGTGGATCCATTTATAAAGGATTCTGTTACGGATGAGTGCTTGAAATGTTACAGCCAGATGGTGATGAGTTGTTTGCATGATGATGGAAATCAACGGCTCTCAATGAGTGATGTCGTTGGCACTTTGGAGTTTGCATTGCAATTGGTGGAGAGTGAGGAGGATAACAAGTTTGGTGGGACCCAAGAAGAGGGAAACACCGTGGTTGCGGCAGTTTACAAGTGA	2442	0.4517	MMSLCVLLFFLALLFPLEVNSYVPVDDYAVNCGDSKDVTIYNRIWVGDVSTKQDFSIIEPQTGQPSVKADALNRFPGNPVFPVGSARISRSKFTYSSVNVTSGPKFLRLHFYPTSYLNFEPYNSIFSVIAGNFTLLKDFNASLWVHDDEKTISKEYCLNVERGERLNITFLPSNNHSDAYAFINGIEVVSMPPYLYYTNLSDSDYKFKQVGHDDTPFQIQKDKALDTLYRVNVGDNQVPPSNDTGMFRNWDSDYPRYLEKQYPLSVSAGYALQLNYKNNTIPNYTAPAAVYLTARSYGMNASAKYNVTWTFEVDSQFTYMVRLHFCEFDPLIQRYGDRAFLIFIAETLAEVYADVIGWGDGFNLVPIHRDYAVVMSTQGDSKKVNLSIKLQQMPDIITKYHDVILNGIEIFKISDRNNNLAGPNPEPIILSQSHSPQNPKTTTVIVVVVAVSALVVASVIGIMVFQRRRRTRGHNKEENSTKKKTEEGSSLPSRSGRYFTIREIKAATNNFADVSIIGVGGFGNVYKGYIDGATPVAIKRLKRDSHQGANEFMNEIELLSQLRHLHLVSLVGYCNDGVEMILVYDFMQRGTLREYLYNSDNKPLSWKQRLEILLGAARGLYYLHTGANHRIIHRDVKSTNILLDENWVAKLSDLGLSKVGPTGISKTHVTTLVKGSLGYLDPEYFRSQRLTLKSDVYSFGVVLLEVLCGRPPIVRTLDMQRESLVDWVRRCYDKGEIDQTVDPFIKDSVTDECLKCYSQMVMSCLHDDGNQRLSMSDVVGTLEFALQLVESEEDNKFGGTQEEGNTVVAAVYK.	814

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00448	813	FunFam	Receptor-like protein kinase FERONIA	587	804	-	-
	Seca1g00448	813	SMART	serkin_6	511	785	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00448	813	CDD	STKc_IRAK	517	783	-	-
	Seca1g00448	813	FunFam	FERONIA receptor-like kinase	223	414	-	-
	Seca1g00448	813	Pfam	Malectin-like domain	31	413	IPR024788	-
	Seca1g00448	813	Gene3D	-	27	191	-	-
	Seca1g00448	813	Gene3D	-	224	414	-	-
	Seca1g00448	813	Gene3D	Phosphorylase Kinase; domain 1	471	586	-	-
	Seca1g00448	813	PANTHER	OS03G0124300 PROTEIN-RELATED	5	479	IPR046957	GO:0004672
	Seca1g00448	813	ProSiteProfiles	Protein kinase domain profile.	511	785	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00448	813	FunFam	FERONIA receptor-like kinase	27	192	-	-
	Seca1g00448	813	MobiDBLite	consensus disorder prediction	470	494	-	-
	Seca1g00448	813	ProSitePatterns	Protein kinases ATP-binding region signature.	517	539	IPR017441	GO:0005524
	Seca1g00448	813	FunFam	receptor-like protein kinase FERONIA	472	586	-	-
	Seca1g00448	813	Gene3D	Transferase(Phosphotransferase) domain 1	587	805	-	-
	Seca1g00448	813	SUPERFAMILY	Protein kinase-like (PK-like)	495	780	IPR011009	-
	Seca1g00448	813	Pfam	Protein tyrosine and serine/threonine kinase	516	781	IPR001245	GO:0004672\|GO:0006468
	Seca1g00448	813	MobiDBLite	consensus disorder prediction	471	490	-	-
	Seca1g00448	813	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	631	643	IPR008271	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00448	Seca-Chr1	5069518	5071959	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00448	22	798	Receptor kinase-like Gene Family	AT3G51550	47.167	0.0	655

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca1g00448		Malectin_like	8.1e-35	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00448	-		-	mtr:25497555	941.414