LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00447	ATGGTGAACTTGAGAGAGAACACAGCAGTGCCCTGTTGTTTCTGTGTGCTACTGTTTTTTCTTCCTCTAGAGGTTAACTCATACGTCCCTGATGATAATTATGCTGTTAACTGTGGTGACTCAAATGATGTTACCATTTATAATCGAATCTGGGTTGGAGACGACGTTAACACCAAGCAGTACTTTTCTATCATTGAACCACAAACAGGGCAATCATCTGTCAAAGCCGATGCTCTTAACCGTTTTCCAGGTAACCCAGTATTTCCGGTTGGCTCCGCACGAATCTCTCACTCCAAATTCACATACTCCTTTGTTAATGTCACCAGCGGCCCAAAGTTCCTTCGCCTTCACTTTTATCCAACGCAATATCTTAACTTTGAACCCTACAACGCCCTCTTTTCTGTCATAGCAGGAAACCTTACCCTTCTCAAAGACTTCAACGCTTCAATTTGGGTTCAAAATGATGAAAAGACAATCACCAAAGAATACTGTGTCAACGTGGAAACAGGGGGTGAGAGGCTAAACATAACCTTCCTTCCCAGCATTAACCACTCTGATGCTTATGCTTTTATCAACGGGATCGAGGTTGTGTCTATGCCTTCCTTTCTCTATTACACTGATCCCAGCGACTTCAATTATAAAATTAAGCTGGTCGGTCATGATGATGTTCAATTCCAAATTCAAAACAACAAAGCTCTGGAGACACTTTACAGAGTCAATGTTGGTGATAATCAGGTTCCACCTAGCAACGATACCGGTATGTTCAGGAATTGGGATAATGATTATCCACGCTACTTGGAGAAGCAATATCCACAAAGTGTACAAGCTGGCTATAATCTTCACCTCAACTATAGAAATAATGCTGTTCCCAATTACACAGCACCAGCCGCTGTATACTTAACTGCCAGAAGTTACGGGAAGGATGCGACCGAGGATTATAATGTAACTTGGAATTTCGAAGTGGATTCACAGTTTAATTATATGGTCAGGTTACATTTCTGCGAATTTGAGTACTGGCTGATCCAGGTTGGGGGCGATAGAGTTTTTCAGATTTTTATAGCTGAGACTTTGGCTGAGGAAAACGCCGATGTGATAAACTGGAGTGGCGGTAACTTAGTTCCTGTTCATAAGGATTATGCTGTGTTTTTGACCACCCAAGGAAGCGCTAAGAGTGAGACGCAACGATTGCCAAAGAACATAATCAGCAAATACCGTGATGTCATACTGAATGGTATTGAGATTTTTAAAATAAGTGATGAGCATAACAATCTCGCCGGACCGAATCCCAAACTCATTCTATCTCCACCCCAACAAGGATCACAAACCCAATCTTCCAAACACGCAAAAACCACTACAATTATCGTTGCGGTGGTTGCAGTTTCAGGCCTCATGCTAGTAGCGTCTGTTATTGGCATCATGGTTTTTCAGCGAAAAAGGATAAGTGGTGATCAAGAGAGGGACGAAAATTCGTGGAAGACAAAGACGGAAGGTTCATCTTTACCATCTCATTTGTGCCGCTACTTTACAATTGCAGAGATCAGAGCTGCCACAAACAACTTCGATGACGTTTTCATCGTTGGAGTTGGAGGATTTGGCCACGTGTATAAAGGTTACATCGATGGAACCACACCCGTTGCGATCAAACGCCTCAAACCTGGTTCTCAACAAGGTGCCAAGGAGTTCATGAACGAGATCGAGATGCTCTCTCAGCTTCGCCACCTCCATTTGGTTTCCCTCATTGGCTACTGCAACGATGGTGTAGAGATGATACTCGTTTATGACTTCATGGCGCGTGGCACTCTCCGCGAGTATCTCTACCACTCTGATAATCAGCCCCTTTTGTGGAAGCAGAGGCTCCAGATCTTACTGGGTGCAGCAAGTGGGCTGCATTATCTTCACGCAGGTGCGAAGCACAATATCATTCACCGCGACGTGAAGAGCACGAACATCTTGTTGGATGAGAAATGGGTGGCCAAGGTGTCTGACTTTGGGTTATCCAAGGTGGGACCCACAGGGATGTCCATGACCCACGTCAGCACTGTAGTGAAGGGGAGCCTCGGGTATTTGGACCCGGAATACTACAAGCGTCAACGGTTGACTCTTAAGTCTGACGTGTACTCATTCGGTGTGGTGCTTCTTGAGGTGCTGTGTGGAAGGCCTCCTTTTGTTCGTACGATGGGCAAGGACAAGGCAAATTTGGTTGATTGGGTTCGGAGGTGTTATGATAAAGGTGAGATTGATCAGACGGTGGATCCATTTATAAAGGATTCTGTTACGGCTGAGTGTTTGAAATGTTACAGCCAGATGGCAATGAGTTGCTTGCGTGATGATGGGAATCAACGGCCCTCGATGAATGATGTGGTTGGGGCATTACAGTTTGCGTTGCAGTTGGTGGAGGGTGAAGAAGAAGATAATAACAAGTTGGGTGGGACCCATGAAGACGGAAACAGTAAGGAAAGACTATGGTTACCGCAGTTTATTAATATGAGTGATGAAGGGAGTGATATGCGATTCAGTAGTACTAGTAGTGATAACATTGGGTCCCAGACCAGCGGTATAACCACAGTCTCAGCCAGTAGCGAGGAACAACCTTTGGTTTCTTCTGCTACGGTCTTCTCAGAGATTGGGAACCCAAGAGCACGATAG	2646	0.4486	MVNLRENTAVPCCFCVLLFFLPLEVNSYVPDDNYAVNCGDSNDVTIYNRIWVGDDVNTKQYFSIIEPQTGQSSVKADALNRFPGNPVFPVGSARISHSKFTYSFVNVTSGPKFLRLHFYPTQYLNFEPYNALFSVIAGNLTLLKDFNASIWVQNDEKTITKEYCVNVETGGERLNITFLPSINHSDAYAFINGIEVVSMPSFLYYTDPSDFNYKIKLVGHDDVQFQIQNNKALETLYRVNVGDNQVPPSNDTGMFRNWDNDYPRYLEKQYPQSVQAGYNLHLNYRNNAVPNYTAPAAVYLTARSYGKDATEDYNVTWNFEVDSQFNYMVRLHFCEFEYWLIQVGGDRVFQIFIAETLAEENADVINWSGGNLVPVHKDYAVFLTTQGSAKSETQRLPKNIISKYRDVILNGIEIFKISDEHNNLAGPNPKLILSPPQQGSQTQSSKHAKTTTIIVAVVAVSGLMLVASVIGIMVFQRKRISGDQERDENSWKTKTEGSSLPSHLCRYFTIAEIRAATNNFDDVFIVGVGGFGHVYKGYIDGTTPVAIKRLKPGSQQGAKEFMNEIEMLSQLRHLHLVSLIGYCNDGVEMILVYDFMARGTLREYLYHSDNQPLLWKQRLQILLGAASGLHYLHAGAKHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSMTHVSTVVKGSLGYLDPEYYKRQRLTLKSDVYSFGVVLLEVLCGRPPFVRTMGKDKANLVDWVRRCYDKGEIDQTVDPFIKDSVTAECLKCYSQMAMSCLRDDGNQRPSMNDVVGALQFALQLVEGEEEDNNKLGGTHEDGNSKERLWLPQFINMSDEGSDMRFSSTSSDNIGSQTSGITTVSASSEEQPLVSSATVFSEIGNPRAR.	882

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00447	881	Pfam	Malectin-like domain	37	417	IPR024788	-
	Seca1g00447	881	FunFam	FERONIA receptor-like kinase	33	200	-	-
	Seca1g00447	881	Gene3D	Transferase(Phosphotransferase) domain 1	596	813	-	-
	Seca1g00447	881	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	640	652	IPR008271	GO:0004672\|GO:0006468
	Seca1g00447	881	FunFam	FERONIA receptor-like kinase	231	418	-	-
	Seca1g00447	881	SMART	serkin_6	520	794	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00447	881	Pfam	Protein tyrosine and serine/threonine kinase	526	789	IPR001245	GO:0004672\|GO:0006468
	Seca1g00447	881	PANTHER	OS03G0124300 PROTEIN-RELATED	12	494	IPR046957	GO:0004672
	Seca1g00447	881	SUPERFAMILY	Protein kinase-like (PK-like)	497	793	IPR011009	-
	Seca1g00447	881	FunFam	Receptor-like protein kinase FERONIA	596	813	-	-
	Seca1g00447	881	MobiDBLite	consensus disorder prediction	833	874	-	-
	Seca1g00447	881	ProSitePatterns	Protein kinases ATP-binding region signature.	526	548	IPR017441	GO:0005524
	Seca1g00447	881	Gene3D	-	231	418	-	-
	Seca1g00447	881	Gene3D	-	33	200	-	-
	Seca1g00447	881	FunFam	Receptor-like protein kinase FERONIA	492	595	-	-
	Seca1g00447	881	MobiDBLite	consensus disorder prediction	833	881	-	-
	Seca1g00447	881	CDD	STKc_IRAK	526	788	-	-
	Seca1g00447	881	ProSiteProfiles	Protein kinase domain profile.	520	794	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00447	881	Gene3D	Phosphorylase Kinase; domain 1	481	595	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00447	Seca-Chr1	5056429	5059095	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00447	28	881	Receptor kinase-like Gene Family	AT3G51550	46.051	0.0	689

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CrRLK1L-1	Seca1g00447		Malectin_like	6.1e-33	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00447	-		-	mtr:25497555	988.408