Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00444 ATGCAAGCAAGTATGGAGAATTTCTGCAAAAAGAACAAAGTTCCCAGTGTGACCATCCTCTCCGTTCTTTTGTTTCTCCTTCAGCTATTATTGTTTCCCAGTGATGTTAACTCATACGATCCTGCTGACAATTTTGCCGTCAACTGCGGCTACTCCGGAAACGTTACCTTTCATAATCGGAACTGGATTGGCGACGTTAACGTTGACCCCAAACTTCACTTTTCTACCATTGAAACTGGACAACCATCTCTCAAATCCGACGCTCCTAACTCTCCTTCAGTTCTCCAAGTTCCATTTGGCACCGCACGTCTCTCTCACTCCAAATTCACATACTCCTTTTCTGTCACTAACGGCCCAAAGTTCCTTCGCCTTCACTTTTATCCAACGCAATATCTTAACTTTGCACCCTACAACGCCCTCTTCTCTGTCATAGCACAAAATCTCACTCTTCTCAAAGACTTCAACGCCTCACTTTGGGTTCACAATGATGAAGAGACCATCACCAAAGAATACTCTGTCAACGTGGAAACAGGGGAGAGGCTAAACATAACCTTCCTTCCCAGCATTAACCACTCTGATGCTTATGCTTTTATCAACGGGATCGAGGTTGTGTCTATGCCTTCCTTTCTCTATTACACTGATCCCAGCGACTTCAATTATAAAATTAAGCTGGTCGGTCATGATGATGTTCAATTCCAAATTCAAAACAACAAAGCTCTGGAGACACTTTACAGAGTCAATGTTGGTGATAATCAGGTTCCACCTAGCAACGATACCGGTATGTTCAGGAATTGGGATAATGATTATCCACGCTACTTGGAGAAGCAATATCCACAAAGTGTACAAGCTGGCTATAATCTTCACCTCAACTATAGAAATAATGCTGTTCCCAATTACACAGCACCAGCCGTTGTATACTTAACAGCCAGAAGTTATGGGAAGGATGCGACCGAGGATTATAATGTAACTTGGAATTTTGAAGTGGATTCACAGTTTAATTATATGGTAAGGTTACATTTCTGCGAATTTGAGTACTGGCTGATTAAGCGTGAGGGTGATAGAGTTTTTCAGATTTTTATAGCTGAGACTTTGGCAGAGCAAAACGCCGATGTGATAAGCTGGAGTGGCAATAACTCGGTTCCTGTTCATAAAGATTATGCTGTGTTTATGTCCACCCAAGGAAGCTCTAGGAAAGTTAATATTTCCATCAAGCTGCAACGATTGCCAAAGGGCATGACCACTAAATACCATGATGTGATATTGAATGGGATCGAGATTTTCAAAATTAGTGATGAGAATAACAATCTCGCTGGTCCGAATCCCGAACCTATTCTTCTATCTCCTCCGCAACAAGCATCGTCCAAAAACTCAAAGACCACCACAGTTATCGTTGCCGTTGTTGCAGTTTCAGTTTCAGGTCTCATACTAGCATCTGTCATTGGCATCATCATAGTTTTCCGGCGAAGGAGAAAAGGTCAACGCAGTAACGAAGAAAAGACGACAGAGAATAAAGGGGCAACTTTGCCATCGCATTTGTGCCGTTGTTTTACAATTGCAGAGATCAGAACTGCCACTAACAACTTCGATGAGGTTTTCATCATCGGGGTTGGAGGATTTGGCCACGTGTATAAAGGTTACATCGATGGAACCACACCCGTTGCGATCAAGCGCCTCAAACCAGGTTCTCAACAAGGTGCCAAGGAGTTTATGAACGAGATTGAGATGCTTTCTCAGCTTCGCCATCTTCATTTGGTTTCCCTCATTGGCTACTGCAACGATGGTGTAGAGATGATACTCGTTTATGACTTCATGGCGCGTGGCACTCTCCGCGAGTATCTCTACCACTCTGATAACCAACCTCTTTCCTGGAAGAAGAGGCTTGAGATCTTATTGGGTGCAGCGAGAGGGTTGCATTATCTTCATACAGGTGCGCAGCACAATATCATTCACCGTGACGTGAAGAGCACGAACATCTTGTTGGATGAGAAATGGGTTGCCAAGGTGTCTGACTTTGGGTTATCGAAAGTGGGGCCCACAGGGATGTCTACGACCCACGTCAGCACTGTAGTGAAGGGGAGCTTTGGGTATTTGGACCCGGAATACTACAAGCGTCAACGGTTGACTCTTAAGTCTGACGTGTACTCATTCGGTGTGGTGCTTTTTGAGGTGCTGTGTGGAAGGCCTCCTTTTGTTCGTACGATGGGCAAGGACAAGGCAAATTTGGTTGATTGGGTTCGGAGGTGTTATGATAAAGGAGAGATTGATCAGACGGTGGATCCATTTATAAAGGATTCTGTTACGGCTGAGTGTTTGAAATGTTACAGCCAGATGGCGATGGGTTGTTTGCGTGATGATGGGAATCAACGGCCCTCGATGAATGATGTGGTTGGGGCATTACAGTTTGCGTTGCAGTTGGTGGAGGGTGGAGAAGAAGATAACAAGTTTGGTGGGACCCAAGAAGACGGAAACGGTAAGGAAAGACTGTTGTTTCCGCAGTTTGTTAATATGAGTGATGAAGGGAGTGACGTGCTTTTCACCAGTACTGATGAATCCGGGACCCAAAGTAGCAAGGTGACCTTAGTCTCAGACACTACTGAGGAACAGCCTTCGGTCTCTGCTGTTGTGTTTTCTGAGATTGGGAATCCAATAGCACGATAG 2658 0.4458 MQASMENFCKKNKVPSVTILSVLLFLLQLLLFPSDVNSYDPADNFAVNCGYSGNVTFHNRNWIGDVNVDPKLHFSTIETGQPSLKSDAPNSPSVLQVPFGTARLSHSKFTYSFSVTNGPKFLRLHFYPTQYLNFAPYNALFSVIAQNLTLLKDFNASLWVHNDEETITKEYSVNVETGERLNITFLPSINHSDAYAFINGIEVVSMPSFLYYTDPSDFNYKIKLVGHDDVQFQIQNNKALETLYRVNVGDNQVPPSNDTGMFRNWDNDYPRYLEKQYPQSVQAGYNLHLNYRNNAVPNYTAPAVVYLTARSYGKDATEDYNVTWNFEVDSQFNYMVRLHFCEFEYWLIKREGDRVFQIFIAETLAEQNADVISWSGNNSVPVHKDYAVFMSTQGSSRKVNISIKLQRLPKGMTTKYHDVILNGIEIFKISDENNNLAGPNPEPILLSPPQQASSKNSKTTTVIVAVVAVSVSGLILASVIGIIIVFRRRRKGQRSNEEKTTENKGATLPSHLCRCFTIAEIRTATNNFDEVFIIGVGGFGHVYKGYIDGTTPVAIKRLKPGSQQGAKEFMNEIEMLSQLRHLHLVSLIGYCNDGVEMILVYDFMARGTLREYLYHSDNQPLSWKKRLEILLGAARGLHYLHTGAQHNIIHRDVKSTNILLDEKWVAKVSDFGLSKVGPTGMSTTHVSTVVKGSFGYLDPEYYKRQRLTLKSDVYSFGVVLFEVLCGRPPFVRTMGKDKANLVDWVRRCYDKGEIDQTVDPFIKDSVTAECLKCYSQMAMGCLRDDGNQRPSMNDVVGALQFALQLVEGGEEDNKFGGTQEDGNGKERLLFPQFVNMSDEGSDVLFTSTDESGTQSSKVTLVSDTTEEQPSVSAVVFSEIGNPIAR. 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00444 885 Gene3D Phosphorylase Kinase; domain 1 488 603 - -
Seca1g00444 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 648 660 IPR008271 GO:0004672|GO:0006468
Seca1g00444 885 ProSiteProfiles Protein kinase domain profile. 528 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00444 885 Pfam Protein tyrosine and serine/threonine kinase 534 796 IPR001245 GO:0004672|GO:0006468
Seca1g00444 885 CDD STKc_IRAK 534 796 - -
Seca1g00444 885 Gene3D Transferase(Phosphotransferase) domain 1 604 814 - -
Seca1g00444 885 SUPERFAMILY Protein kinase-like (PK-like) 506 801 IPR011009 -
Seca1g00444 885 MobiDBLite consensus disorder prediction 845 864 - -
Seca1g00444 885 FunFam Receptor-like protein kinase FERONIA 500 603 - -
Seca1g00444 885 FunFam Receptor-like protein kinase FERONIA 604 821 - -
Seca1g00444 885 ProSitePatterns Protein kinases ATP-binding region signature. 534 556 IPR017441 GO:0005524
Seca1g00444 885 Gene3D - 44 207 - -
Seca1g00444 885 Gene3D - 238 430 - -
Seca1g00444 885 FunFam FERONIA receptor-like kinase 238 430 - -
Seca1g00444 885 Pfam Malectin-like domain 47 429 IPR024788 -
Seca1g00444 885 SMART serkin_6 528 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00444 885 PANTHER OS03G0124300 PROTEIN-RELATED 18 496 IPR046957 GO:0004672
Seca1g00444 885 FunFam FERONIA receptor-like kinase 44 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00444 Seca-Chr1 5011942 5014599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00444 39 885 Receptor kinase-like Gene Family AT3G51550 45.404 0.0 698
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca1g00444 Malectin_like 5.7e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00444 - - mtr:25497555 974.926