Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00443 ATGCTGCACTTGAGCATCAACCATTTCACCCTTGTTTCCAAATCCAAATCATCACCGATCAGACTCCTTTATCTCATATTCTCCATCCTTCAACACACGTTCATCATCCCCATTAACTCTAACACCCTTCCACAAGATCTCGCAATCAACTGTGGCTCTTCCTCTGAATCAAATTCTACATGGACTGGAGACACCAATTATTCAAAAAGCTTTTCTCTCTTCGAACCACAAAGAAACCAGTCTTCAATCGCTGCAATTTCACCCCAATTTTCTGATTCAAAAGTTAACAGAGTCCCCTATGGCACCGCACGCCTTTCTCACTACGAATTCACCTACTCGTTACATGTCTCTGCAGGCCCAAAGTTCCTTAGGCTTCATTTTCACCCAGCTTCATACCCCAACTTCCACCGTTCCATGTCCTTATTCTCTTTAAAAGCAGGGCCTTACACCCTTCTCAAGGATTTCAACGCTTCACGTGTTTCTGATGAGGGTGGTGATCCTCAAAAGAAGATTCTTCTCATGGAGTACTGCATAAAAATTGAACAGGGTAATCAGAGGCTAAACCTGACCTTCACACCAAATCACACCACTCATGCAGATTCCCATGCCTTTATCAACGGAATCGAAGTCCTGTCTTTGGTAAAATCCAATCTTCATTGCAGTAAGCCAAACTATTCATCGTTCAAATTTGTTAGCATAATCCATGAAACCAAAACCAATCTTAGTTCATCAGGATCAACAGCAGGATCAGATTGCTCAAAAACAAAATTTGTCGGTGTTTTCTGTGTTGCAGTTGTTTCTGTTTTTATTTTGGGGTCTGTTATTTACTTATTGTGTATTTGGTTCCGGAAAATGGCCAGAACAGAGGTGGAGGTGGTTTCTGAAGAGATAAGCAATAAAAGTATATCAGTTTCGTCTTCAAATTTGTGCCGTCACTTCTCAATCATTGAGATAAGAGCAGCCACAATAAACTTTGATGACATTTTCGTTGTTGGGGTTGGAGGTTTTGGGAAAGTGTATAAAGGTTACATTGATGATGGTACCATACCAGTGGCAATCAAACGTTTCATTCCAAATTGTGGACAAGGAGTTCAAGAGTTCAAAACAGAGGTTGAGATGCTTTCTCAGCTTAGCCATCCTCATTTGGTCTCTCTAATTGGTTTCTGTAACGATGAAGATGACATGATAATTGTCTATGATTTCATGGCCAATGGGACCCTCCGTGACCATCTACATGGTTCATCAGCAAAAGCCCCTCTTTCTTGGAAGCAACGGCTTGAGATTTGCATTGGGGCAGGGCTTGGATTGCAGTATCTCCATAATGGTGCCAAGTATAGTATTATTCACCGTGATGTGAAAAGTTCCAACATTTTGTTGGATGAGAAATGGGTGGCTAAGATTTCGGATTTTGGGTTGTGTAAATTTGGACCAAATGGGGTTTCTAAGTTCCATGTTACCACACAAGTGAAGGGTAGCCTTGGATATTTAGACCCTGAATACTCCAAGACAAAGTGGTTGACCCACAAGTCTGATGTGTACTCTTTTGGTGTGGTGTTGCTTGAAGTCTTGTGTGGGAGGCCACCTTTGTTGCGTAAAGTGGAAGGGCAAGAGAGAATCTTGGTGGAGTGGGCCCGAACATGCCATAGTGAGGGACCTCAAGCCATAGACCAAATGGTTGATCCATTTCTGAGAGGAACAATAGTGCCAAAGTGTTTAGATAAGTTCGTTGAGGTGGCATTGAATTGTGTTGTTTGTGATGGAAATGAACGGCCATCAATGAGTGATGTGGTAGAGGGGCTTGAGCTTGCATTGCAGCTACAACAGAGCATAGAAGAAGAAGATCCAAGGTCCCAGATACCGAAGAATTCAACAGTTTAG 1878 0.4228 MLHLSINHFTLVSKSKSSPIRLLYLIFSILQHTFIIPINSNTLPQDLAINCGSSSESNSTWTGDTNYSKSFSLFEPQRNQSSIAAISPQFSDSKVNRVPYGTARLSHYEFTYSLHVSAGPKFLRLHFHPASYPNFHRSMSLFSLKAGPYTLLKDFNASRVSDEGGDPQKKILLMEYCIKIEQGNQRLNLTFTPNHTTHADSHAFINGIEVLSLVKSNLHCSKPNYSSFKFVSIIHETKTNLSSSGSTAGSDCSKTKFVGVFCVAVVSVFILGSVIYLLCIWFRKMARTEVEVVSEEISNKSISVSSSNLCRHFSIIEIRAATINFDDIFVVGVGGFGKVYKGYIDDGTIPVAIKRFIPNCGQGVQEFKTEVEMLSQLSHPHLVSLIGFCNDEDDMIIVYDFMANGTLRDHLHGSSAKAPLSWKQRLEICIGAGLGLQYLHNGAKYSIIHRDVKSSNILLDEKWVAKISDFGLCKFGPNGVSKFHVTTQVKGSLGYLDPEYSKTKWLTHKSDVYSFGVVLLEVLCGRPPLLRKVEGQERILVEWARTCHSEGPQAIDQMVDPFLRGTIVPKCLDKFVEVALNCVVCDGNERPSMSDVVEGLELALQLQQSIEEEDPRSQIPKNSTV. 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00443 625 Gene3D - 47 214 - -
Seca1g00443 625 ProSitePatterns Protein kinases ATP-binding region signature. 331 354 IPR017441 GO:0005524
Seca1g00443 625 Gene3D Transferase(Phosphotransferase) domain 1 402 622 - -
Seca1g00443 625 CDD STKc_IRAK 340 601 - -
Seca1g00443 625 ProSiteProfiles Protein kinase domain profile. 325 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00443 625 PANTHER OS07G0166700 PROTEIN 309 607 IPR045272 GO:0004714|GO:0006468
Seca1g00443 625 SUPERFAMILY Protein kinase-like (PK-like) 301 607 IPR011009 -
Seca1g00443 625 FunFam receptor-like protein kinase FERONIA 288 401 - -
Seca1g00443 625 Gene3D Phosphorylase Kinase; domain 1 285 401 - -
Seca1g00443 625 SMART serkin_6 325 603 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00443 625 FunFam FERONIA receptor-like kinase 46 214 - -
Seca1g00443 625 Pfam Protein tyrosine and serine/threonine kinase 331 599 IPR001245 GO:0004672|GO:0006468
Seca1g00443 625 FunFam Receptor-like protein kinase FERONIA 402 622 - -
Seca1g00443 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 447 459 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00443 Seca-Chr1 5002325 5004202 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00443 39 612 Receptor kinase-like Gene Family AT3G51550 40.777 4.51e-127 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca1g00443 PK_Tyr_Ser-Thr 1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00443 - - adu:107486605 723.391