Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00438 ATGTTTCTCAAGTATTTAGGTTTCTGTCGTTCGAATTCGAAGCATACAAGTTCATCTCAGAGACAGTATCCAACTGTAATAGAAGAGCTATGCCATCAGTTTTCTCTGTCAGATGTTACGAAATCAACCAACAACTTTGATAAAAATCTAATACTTGGAGAAGGAGGTGATTGTACAGTATACAAAGGTTGTCTGCAGTACAATGGAACTAATGATTATACAGTCGCAATCAAACGAATTTATGCAAATACAGAAAAGGAAATCAAAGAGTTCAAAAAGGAAATTGAGATGCTCTGCCAACTTCATCATCCTAATTTGATGACTTTAATAGGATATTGTGACAGCACAAATGAGAAGATTATTGTGTATGAGTACATGGCTAATGGAGCTCTCTATTATCGCCTATCTAATGGTATAAACAAAGAACCACTCTCATGGAAGCAAAGGGTAAAGATCTGCATAGGAGCAGCACGTGGACTACACTTTCTTCATACTGGAGCCAAGCGCACCATCTTTCATCGTGACATACAACCTCATAAAATTTTATTGGATGAAAACATGGTGCCCAAACTCTCAGATTTGAGGGTTTCATTACAGGGGCCTCTGTTTAAGTCAAAGCCAAAACCAAAGTCCATACTTTCTCTCATAGGTACATATGGTTACGTGGCTCCTGAGGTTTTACAAAACAAAACAGTAACAGATAAGAGTGACGTTTACTCCTTTGGCATGGTTCTGCTAGAAGTGGTATGTACATATAGTTACACAGCCCCTGAGGTGGTATTTAACATGACCATCACAGATAAAGGTGATGTTTATTCCTTTGGTATAGTTCTACTAGAAGTGGTATGCACGGATAACAGGCTAAAAATGTGGCAGGGGCATCCAATTGAGGATATTATTGATCTGAAAATCAGAGGAAATATTGCACCAGAGTGTTGGGAAGTGTTTATGGATATCACAAAAAGATGCTTAAATGATGAACCGGATGAGCGACCAACGATGGGTGAAGTAGAGGTGCAACTTGAGTGTGCTCTGACTTTGCAGGAAGAAGCAGATATAAAAAAGACAATTAGTGATTATACCTTATTATCCACCACCACCATTAATAGTCGTCTACTAGAAGTAGAAGATGTCAACTTTATGAGTGATTGA 1152 0.3828 MFLKYLGFCRSNSKHTSSSQRQYPTVIEELCHQFSLSDVTKSTNNFDKNLILGEGGDCTVYKGCLQYNGTNDYTVAIKRIYANTEKEIKEFKKEIEMLCQLHHPNLMTLIGYCDSTNEKIIVYEYMANGALYYRLSNGINKEPLSWKQRVKICIGAARGLHFLHTGAKRTIFHRDIQPHKILLDENMVPKLSDLRVSLQGPLFKSKPKPKSILSLIGTYGYVAPEVLQNKTVTDKSDVYSFGMVLLEVVCTYSYTAPEVVFNMTITDKGDVYSFGIVLLEVVCTDNRLKMWQGHPIEDIIDLKIRGNIAPECWEVFMDITKRCLNDEPDERPTMGEVEVQLECALTLQEEADIKKTISDYTLLSTTTINSRLLEVEDVNFMSD. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00438 383 SUPERFAMILY Protein kinase-like (PK-like) 24 250 IPR011009 -
Seca1g00438 383 PANTHER OS07G0166700 PROTEIN 251 348 IPR045272 GO:0004714|GO:0006468
Seca1g00438 383 FunFam Receptor-like protein kinase ANXUR2 9 125 - -
Seca1g00438 383 Gene3D Transferase(Phosphotransferase) domain 1 251 366 - -
Seca1g00438 383 Gene3D Transferase(Phosphotransferase) domain 1 126 250 - -
Seca1g00438 383 Gene3D Phosphorylase Kinase; domain 1 6 125 - -
Seca1g00438 383 SUPERFAMILY Protein kinase-like (PK-like) 248 337 IPR011009 -
Seca1g00438 383 Coils Coil 81 101 - -
Seca1g00438 383 ProSiteProfiles Protein kinase domain profile. 46 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00438 383 Pfam Protein tyrosine and serine/threonine kinase 252 340 IPR001245 GO:0004672|GO:0006468
Seca1g00438 383 Pfam Protein tyrosine and serine/threonine kinase 51 250 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00438 Seca-Chr1 4959982 4970999 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00438 11 368 Receptor kinase-like Gene Family AT1G30570 40.390 2.42e-77 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca1g00438 PK_Tyr_Ser-Thr 7.1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00438 - - gmx:100779112 421.779