Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00437 ATGGCTGATGAGGTCACCGAGAAGGTCATAGAGCAGTGTCAGGTTAGTCCTCCACCACCTTCTCTTCCTTCCGTCTCCGTTCCTCTAAGTTACCTTGACATCCCTTGGCTTTACCTTCCCCCAGTCAAACATATTTTCTTCTATGACTTCCCTTATCCAACCCAACACTTCCTTCAAACTCTCCTTCCTAATCTCAAGCACTCTCTTTCACTCACTCTCCAACACTTCTTCCCCTTCGCTGCTAATGTCCTCCTCCCTCCAAAGCCCCAACCCCCTCACATCCTCTACTCCCCAGGTGACTCTGCCCCTTTTACCGTTGTTGAATCCACAGCAGATTTCACTCGCTTTGTATCCGATTCCCCAAGAGATCTCACAGATGAGTACCCTTTTGCTCCCCTGCTTCCTTCACCAACTACCTTACAAGATGGCACTTTGTTGGTCCCAACTATGGCCATCCAAGTCACTGTTTTCGCCAACTCTGGACTCATCATCTGTGTTGCCTTCAGACACGAGGTTGCAGATGGTAAATCGTTTCATCATTTCATGAAGTTTTGGGCTTCAACTTGTAGATCAACAACAGGGGACTCTCACTCTGCTTCCTCATCACTTCCCCTGCCGTTGCACAACAGGGACATGATTGAAGACCCAAAAGGGCTTAAGCCCATTTTCTTGGAGCAAATGTGGAATCGTCCACCACCATTCACCACACAATCCTTCCATGATGCTGCTACCGACATGGTGCGTCACAGATTCATATTAAGCCGTCACCAAGTTGAAAAACTCAAGAAATGGGTGGCTGTTAGATGTGAAAGCATCGGTCTTGAGACACTGCACTTGTCAACATTTACTGTGACAGTTTCTTTGTTTTGGGTTTGTAAGGTGAAATCTGAAGACACTGATGTTTGTAGTGTTCCTGACAATGAGGATTGCTACTGTTTTTGTTTTCCAATAGATTGGCGTAACCGTGATGAGGTTTCAATTCCATCCACATACTTTGGAAATTGCTTGACAAATAGCATTGTGACACTCCACAGGAGCAAGATAATGGGAGAAAATGGTATTTGTGAGGCAGTGCATGCTATTGGAAGCCAAATTAGAGGACTGAAGGGTGATCCTTTGAAAGGGGCTGATGGGTTTATGTCAGGTAGTAATAGTAGGGAGTTGATGAAATGGTTCCAGCGACAGAGAGTGACACTAATCTCAGGCTCACCAAAGTTTAATGTGCATCAGACTGATTTTGGGTGGGGAAAGCCCAGGTTGAGACATTCACTTCATGATTCAGCAACAATGTGCCCTTCTGATTGTAGGGAAGAAGAACACGGTATTGAAGTTGCGCTACTGCTCAAAAGAGCTCAAATGAAGAAACTCCATACCATCTTGGAAGAGCAACTTAGAGATGTTATTAATGTTGTTCCTGAGTGA 1422 0.4529 MADEVTEKVIEQCQVSPPPPSLPSVSVPLSYLDIPWLYLPPVKHIFFYDFPYPTQHFLQTLLPNLKHSLSLTLQHFFPFAANVLLPPKPQPPHILYSPGDSAPFTVVESTADFTRFVSDSPRDLTDEYPFAPLLPSPTTLQDGTLLVPTMAIQVTVFANSGLIICVAFRHEVADGKSFHHFMKFWASTCRSTTGDSHSASSSLPLPLHNRDMIEDPKGLKPIFLEQMWNRPPPFTTQSFHDAATDMVRHRFILSRHQVEKLKKWVAVRCESIGLETLHLSTFTVTVSLFWVCKVKSEDTDVCSVPDNEDCYCFCFPIDWRNRDEVSIPSTYFGNCLTNSIVTLHRSKIMGENGICEAVHAIGSQIRGLKGDPLKGADGFMSGSNSRELMKWFQRQRVTLISGSPKFNVHQTDFGWGKPRLRHSLHDSATMCPSDCREEEHGIEVALLLKRAQMKKLHTILEEQLRDVINVVPE. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00437 473 Gene3D - 6 235 IPR023213 -
Seca1g00437 473 Gene3D - 242 467 IPR023213 -
Seca1g00437 473 PANTHER - 8 465 - -
Seca1g00437 473 Pfam Transferase family 20 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00437 Seca-Chr1 4950535 4951956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00437 32 336 Monolignol Biosynthesis Gene Families AT5G48930 22.115 4.03e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00437 - - gmx:100782335 514.998