Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00436 ATGGGAATGATTCTTCCCAAATATTTGGGCTTGTGTAGTTCAAAGCATAAAAATTCATCTTCCACACACTCTTCAACACTAATAGAAGATTTATGCCATCAATTTTCCCTGGCCGATCTAACGAAATCAACCAACAACTTTGATGAAAGCCAAATAGTAGGAGGAGCATTTGGTGAAATATACAAAGGTTCTCTCAAACATCACAATGGTGCAACTAATTATACAATAGGAATGAAACGGGTTAAAGCGAAATCCAGCAAAGAGATCCTTGAATTAAAGAACGAAATTGAGTTGCTCTGTCAGCTTCGTCACCCAAATTTGATATCTCTTATAGGATTTTGTGGCCACAAAGAAGAGATGATTGTTGTGTATGAGTACATGCCCAATGGTAGTCTTTATGATCACCTATATTGTAGTGATACGAAAATAAAACCACTCACATGGAAGCAAAGGCTAAAGATTTGCATGGGAGCAGCATGTGGACTACACTACCTTCACACAGGAGCCAAGCGCACCATTTTTCACCGTGACATAAAACCCCATGACATTCTTTTGGATAACAATATGTTGCCAAAGCTCGGAGATTTCAGAATTTCCTTGCAAGGTCCTCGTTTTATGTCGAAGCCAAAACCAATTGAAGTAAAATCTGTTTTAGGTACTTATGGTTATATGGCTCCCGAGTATGTCATGAAGAAGACCTTCACAGAGAAATGTGACGTTTACTCATTTGGTATGGTTCTGCTAGAAGTGGTATGCGCAAAGGACAAGCAAACAATTTTTGATAAGATGACCAAGTTAAAGCATGATTTGGAACCTGTTGAAAGAGAAGATTTAGAAAGGTTTAGTGCTTGCAGTTGCAGTGTAGCTATAGTGCTTATACGTTCCTTTGTGGAAAGGTATCCAGTTGAGGAGATTATAGAACCAATTCTTATGGGAAAGATTGCGCCAGAATGTTGGGAAGTATTCATGGATATCATCGTAAGATGCTTGGAGTTTGATCCAAATGAGAGACCAATAATGGGTGAGGTGGAGGTGCAACTAGAGCATGCTCTGTCATTACAGGAAGAAGCAGATATCAGAAAGACTTGTGATGATTATACCTTACTATCTACCACCATTATTAACTCTCAGAGTAGGTGTCAATCCTAG 1149 0.389 MGMILPKYLGLCSSKHKNSSSTHSSTLIEDLCHQFSLADLTKSTNNFDESQIVGGAFGEIYKGSLKHHNGATNYTIGMKRVKAKSSKEILELKNEIELLCQLRHPNLISLIGFCGHKEEMIVVYEYMPNGSLYDHLYCSDTKIKPLTWKQRLKICMGAACGLHYLHTGAKRTIFHRDIKPHDILLDNNMLPKLGDFRISLQGPRFMSKPKPIEVKSVLGTYGYMAPEYVMKKTFTEKCDVYSFGMVLLEVVCAKDKQTIFDKMTKLKHDLEPVEREDLERFSACSCSVAIVLIRSFVERYPVEEIIEPILMGKIAPECWEVFMDIIVRCLEFDPNERPIMGEVEVQLEHALSLQEEADIRKTCDDYTLLSTTIINSQSRCQS. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00436 382 ProSiteProfiles Protein kinase domain profile. 46 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00436 382 FunFam Receptor-like protein kinase ANXUR2 12 126 - -
Seca1g00436 382 Gene3D Phosphorylase Kinase; domain 1 9 126 - -
Seca1g00436 382 SUPERFAMILY Protein kinase-like (PK-like) 18 343 IPR011009 -
Seca1g00436 382 Pfam Protein tyrosine and serine/threonine kinase 51 346 IPR001245 GO:0004672|GO:0006468
Seca1g00436 382 Gene3D Transferase(Phosphotransferase) domain 1 127 372 - -
Seca1g00436 382 PANTHER OS07G0166700 PROTEIN 32 354 IPR045272 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00436 Seca-Chr1 4945646 4947565 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00436 12 357 Receptor kinase-like Gene Family AT5G39000 42.000 9.71e-78 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca1g00436 PK_Tyr_Ser-Thr 1.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00436 - - gmx:100775244 421.779