Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00435 ATGGTTCTTAAATATCTCTGTTTCTATCGTTCATCTCAGAGGAAGCGCAATCCAACAATAATAGAAGAGTTATGCCCTCAATTTTCTCTGGCCGATCTGAGGAAATCAACCAACAACTTCGATGAGAATCGAATAATAGGAAGAGGATACTTTAGTTTAGTATATAAAGGTCGTCTCCAATACAATTGTACACATTATACAGTTGCAGTGAAGCGAATTAAGGATTCTAAAAAAGGATTGGAAGAGTTCAAGAAAGAAATCGAGTTGCTCTGCCAGCTTCGTAACCCTAATTTGGTCACTCTTATTGGATTCTGCAACCACAAAGATGAGAAGATTCTCGTATATGAGTACCTCCCTAATGGATCTCTCCGCGATCATCTATTCAATAGGGAGAAGGAATTACCTCTGTCATGGAAGAAAAGGTTAGAGATCTGCATAGGAGCAGCACGTGGAGTGCACTACCTCCACACAGGAGCCAGACGCACTATCTTTCACCTTGACATCAATTTGGGAAACATTCTTCTGGATAGCAATATGGTACCCAAACTCACAGATTTCTGGTTTTCCTTACAGGGACCTCTATCCACATCAAAGCCTAAACCAATTGAAGTAAACAGAATTTGCGGTACATCTGGTTCCCCTGAGTATGCTTTATATGGCACGGTGACAGATAAATGTGACGTTTATTCATTTGGTGTGGTTCTACTAGAAGTGGTATGTGCAAAGTCAATTTTTAAAATTTTGAAACAGATCTACGAGTGTGAGCTCCCAAGTGAAGAATTAGAAGTGTCTAACCGTTCAGAAGCTTCATATGGTATGCCTTTTCACATTATGCGAAGACAGCTCATAGCTCATAGCTTTATTGATGCGCCTCTAGCAGGGAAAATTGCACCAGAGTGTTGGGAAGTATACATAGATATAATAGACGGTTGCTTGAAGGATGAACCAAATGATCGACCAACGATGGGTGAAGTGGAAGTGGAACTTGAACGTGCTCTTACTTTGCAACTGGAAGCTGATGCCAGGAATACTGCTGCTGCTGATTATAGCTTATTAACCAACAGCACTACTCAAACTCAACAAGAAGAGGCGCCAATTTCAGCCTAA 1107 0.4083 MVLKYLCFYRSSQRKRNPTIIEELCPQFSLADLRKSTNNFDENRIIGRGYFSLVYKGRLQYNCTHYTVAVKRIKDSKKGLEEFKKEIELLCQLRNPNLVTLIGFCNHKDEKILVYEYLPNGSLRDHLFNREKELPLSWKKRLEICIGAARGVHYLHTGARRTIFHLDINLGNILLDSNMVPKLTDFWFSLQGPLSTSKPKPIEVNRICGTSGSPEYALYGTVTDKCDVYSFGVVLLEVVCAKSIFKILKQIYECELPSEELEVSNRSEASYGMPFHIMRRQLIAHSFIDAPLAGKIAPECWEVYIDIIDGCLKDEPNDRPTMGEVEVELERALTLQLEADARNTAAADYSLLTNSTTQTQQEEAPISA. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00435 368 FunFam Receptor-like protein kinase ANXUR2 7 117 - -
Seca1g00435 368 SUPERFAMILY Protein kinase-like (PK-like) 15 328 IPR011009 -
Seca1g00435 368 ProSitePatterns Protein kinases ATP-binding region signature. 46 71 IPR017441 GO:0005524
Seca1g00435 368 Pfam Protein tyrosine and serine/threonine kinase 43 327 IPR001245 GO:0004672|GO:0006468
Seca1g00435 368 PANTHER OS07G0166700 PROTEIN 25 336 IPR045272 GO:0004714|GO:0006468
Seca1g00435 368 ProSiteProfiles Protein kinase domain profile. 40 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00435 368 Gene3D Phosphorylase Kinase; domain 1 5 117 - -
Seca1g00435 368 PIRSF ILK 12 342 - -
Seca1g00435 368 Gene3D Transferase(Phosphotransferase) domain 1 118 354 - -
Seca1g00435 368 FunFam Os07g0541700 protein 118 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00435 Seca-Chr1 4943314 4945499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00435 11 362 Receptor kinase-like Gene Family AT5G39000 40.336 4.44e-74 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca1g00435 PK_Tyr_Ser-Thr 3.7e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00435 - - lja:Lj1g3v3029330.1 373.629