Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00434 ATGGTTCTCAAATGTGTGGGTTTCCGCCGCTCAAGGCAGTATCCAACAGTAATAGAAGAGCTATGCCATCAATTTTCTCTGTCAGATATTAGAAAATCAACCAATAACTTTGATAAAAACCTAATAATTGGAGAAGGAGACTCTGCTACAGTATACAAAGGTTGTCTCCATCATAATGTTGCCACAGATTGTACAGTAGCGGTGAAGCGAATGAACAAGGAACACCAACATAAATTGGAGTTCAAGAAGGAAATTGAGTTGCTCTGCCAGCTTCATCACCCTAATTTGGTCTCTCTCATAGGATTCTGCATCCAAAAAAATGAGATGATTATTGTGTACGAGTATATGCCCAATGGATCTCTGTATGATCATCTACACAATAGGAATATGGAACCACTCTCATGGAGAAAAAGGCTAGAAATATGCATAGGAGTTGCTCGTGGGGTGCACTACCTTCACACAGGAGCCAGACGCACCATCCTTCACCGTGACATCAAACCCTCTAACATTCTTTTGGATAGCAATATGCTCCCCAAAATCTCAGATTTCGGGCTTTCCTTACAGGGTCCGCTGTCTACTTCAAAGCCAAAACAGATTGAAGTAAAATATCTTGCAAGTACAATTGGTTTAATAGCTCCTGAGAATTGGAATACGTTGGGCGGTTTGACTGATCGAAGTGACGTTTATTCCTTTGGCATTGTTCTATTAGAAGTGATATGTGCAAAGCCATATTATGAAATTTTAATGGAGATGGAAAGGATCCAAAGTGAAGAATTATCATTTGCTGCTTACATTAAGCGAAGGCTGCGAGCTGAGGATATTGATAGGATTCTAGCTGGAACAATTGCATCAGAGTGTTTGGAAGTATACGTAGATATTATAGATAGCTGCTTGAAGGATGAACCAAATGATCGACCAACAATGGGTGAGGTGGAGGTGGAACTTGAGCGTACTCTTACTTTGCAACTGGAAGCAGACGCCAGCTGGAATATAATTACTTAA 1002 0.4052 MVLKCVGFRRSRQYPTVIEELCHQFSLSDIRKSTNNFDKNLIIGEGDSATVYKGCLHHNVATDCTVAVKRMNKEHQHKLEFKKEIELLCQLHHPNLVSLIGFCIQKNEMIIVYEYMPNGSLYDHLHNRNMEPLSWRKRLEICIGVARGVHYLHTGARRTILHRDIKPSNILLDSNMLPKISDFGLSLQGPLSTSKPKQIEVKYLASTIGLIAPENWNTLGGLTDRSDVYSFGIVLLEVICAKPYYEILMEMERIQSEELSFAAYIKRRLRAEDIDRILAGTIASECLEVYVDIIDSCLKDEPNDRPTMGEVEVELERTLTLQLEADASWNIIT. 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00434 333 ProSitePatterns Protein kinases ATP-binding region signature. 43 69 IPR017441 GO:0005524
Seca1g00434 333 Pfam Protein tyrosine and serine/threonine kinase 42 313 IPR001245 GO:0004672|GO:0006468
Seca1g00434 333 Gene3D Phosphorylase Kinase; domain 1 7 115 - -
Seca1g00434 333 FunFam Os07g0541700 protein 116 205 - -
Seca1g00434 333 SMART serkin_6 37 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00434 333 ProSiteProfiles Protein kinase domain profile. 37 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00434 333 SUPERFAMILY Protein kinase-like (PK-like) 14 315 IPR011009 -
Seca1g00434 333 PANTHER OS07G0166700 PROTEIN 22 322 IPR045272 GO:0004714|GO:0006468
Seca1g00434 333 Gene3D Transferase(Phosphotransferase) domain 1 116 328 - -
Seca1g00434 333 FunFam Receptor-like protein kinase ANXUR2 6 115 - -
Seca1g00434 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Seca1g00434 333 PIRSF ILK 28 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00434 Seca-Chr1 4941495 4942841 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00434 20 325 Receptor kinase-like Gene Family AT5G39000 44.586 7.10e-78 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca1g00434 PK_Tyr_Ser-Thr 9.1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00434 - - ahf:112743375 364.77