Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00433 ATGTCTGCTATTGTTGGTTTTTCTCTCCCTTGGCTAATGTATCATGAATTTCAAGTCCATTGGTTTCCTCTTTCACTAGAAGCAATCCAATTGAGTGGCTGTAGAGAAACTCCAAGAGAGACAAAAGAGCTTTCCATTGAAGTTGTAACTAATATTTTGGGAAATGGTTATCAGGCTCCAGAAGCACAAAAATTGGTGAAGCCATCACAAAAGTGGGGTGTTTATTCATATGGTGTGATTTTGTTAGAAATGATCACAGGGCGATTACCCATTATCCAAGTGAGTAACTCAGAAATAGACCTTGTTCAATGGATTCAGTTATGCATTGAGGAGAATAAACCACTCTCAGACGTATTAGACCCATACTTGGTTGAAGATGCAGATAAGGAAGAAGAGATAATTGCAGTTTTGAAATTTTTGATGACTTGTGTCCATAACCACCCTGATAAGAGACCTACAATGAGGCACGTGCTTGATGCTTTGGACAAATTGTCCATTTCCTCTGATTGA 510 0.3863 MSAIVGFSLPWLMYHEFQVHWFPLSLEAIQLSGCRETPRETKELSIEVVTNILGNGYQAPEAQKLVKPSQKWGVYSYGVILLEMITGRLPIIQVSNSEIDLVQWIQLCIEENKPLSDVLDPYLVEDADKEEEIIAVLKFLMTCVHNHPDKRPTMRHVLDALDKLSISSD. 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00433 169 Gene3D Transferase(Phosphotransferase) domain 1 30 168 - -
Seca1g00433 169 SUPERFAMILY Protein kinase-like (PK-like) 49 161 IPR011009 -
Seca1g00433 169 Pfam Protein kinase domain 50 159 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00433 169 ProSiteProfiles Protein kinase domain profile. 1 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00433 169 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 49 165 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00433 Seca-Chr1 4939195 4939704 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00433 54 169 Receptor kinase-like Gene Family AT2G01210 62.069 1.73e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca1g00433 Pkinase 1.5e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00433 - - gmx:100792873 206.838