Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00431 ATGGCCCAATCGTTCGGTCAGACCGAGATTAACTGGGAGAAGCTAGATAAAACTAAGTTCTATGTGGTAGGAGCTGGACTCTTTACAGGTGTTACTGTTGCACTTTACCCAGTTTCAGTTGTGAAAACTAGGCTGCAGGTTGCTACAAAGGATGCTGTAGAGAGAAATGCATTTTCTGTTGCAAAGGGATTGGTTAAAACTAATGGCATCCCTGGTTTGTATAGAGGGTTTGGCACAGTTATCACAGGTGCAATTCCAGCCAGAGTCCTATTCCTCACTGCTCTAGAGACCACAAAGGTGACTGCCTTTAGAATGCTGGAACCGTTTAGACTATCTGAAACTACCCAAGCTGCCATAGCAAATGGAGTTGCAGGCATGACATCGTCGCTTTTTGCTCAATTTGTGTTTGTTCCGATTGATGTGGTAGTTAGCCAAAAGTTGATGGTGCAAGGATACTCAGGCCATGCTCAATACAGCGGGGGTTTGGATGTTGCTCGTAAGGTTTTAAGGTCTGATGGCATCCGGGGACTGTATCGAGGGTTTGGTCTCTCGGTTGTTACTTATTCACCTTCTAGTGCAGTATGGTGGGCAAGTTATGGTTCAAGCCAACGCTTCATTTGGAGATTCTTGGAACATGGTACCAAAAATGATGAAGGCACTCCTAGTCTGCAGAAGATAATGTTAGTTCAGGCTGCTGGAGGGATTATTGCTGGTGCAACTGCATCCTGCATTACAACCCCGTTGGATACTATCAAGACACGATTACAGGTGATGGGTCATGAAAAAAGAACCTCTGTAAAACAAGTCGTTAAAGATTTAATCAAAGAAGATGGTTGGAAAGGCTTATATAGAGGGTTTGGTCCAAGATTTTTTAGCATGTCCGCATGGGGCACTTCAATGATATTGACTCATGAGTATCTAAAACGCATATGCTCAAAAGATGAATAG 948 0.4367 MAQSFGQTEINWEKLDKTKFYVVGAGLFTGVTVALYPVSVVKTRLQVATKDAVERNAFSVAKGLVKTNGIPGLYRGFGTVITGAIPARVLFLTALETTKVTAFRMLEPFRLSETTQAAIANGVAGMTSSLFAQFVFVPIDVVVSQKLMVQGYSGHAQYSGGLDVARKVLRSDGIRGLYRGFGLSVVTYSPSSAVWWASYGSSQRFIWRFLEHGTKNDEGTPSLQKIMLVQAAGGIIAGATASCITTPLDTIKTRLQVMGHEKRTSVKQVVKDLIKEDGWKGLYRGFGPRFFSMSAWGTSMILTHEYLKRICSKDE. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00431 315 FunFam Mitochondrial substrate carrier family protein 21 314 - -
Seca1g00431 315 Gene3D Mitochondrial carrier domain 21 315 IPR023395 -
Seca1g00431 315 PRINTS Mitochondrial carrier protein signature 234 256 IPR002067 GO:0055085
Seca1g00431 315 PRINTS Mitochondrial carrier protein signature 33 47 IPR002067 GO:0055085
Seca1g00431 315 PRINTS Mitochondrial carrier protein signature 178 196 IPR002067 GO:0055085
Seca1g00431 315 Pfam Mitochondrial carrier protein 25 100 IPR018108 -
Seca1g00431 315 Pfam Mitochondrial carrier protein 229 314 IPR018108 -
Seca1g00431 315 Pfam Mitochondrial carrier protein 119 206 IPR018108 -
Seca1g00431 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 225 310 IPR018108 -
Seca1g00431 315 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 314 - -
Seca1g00431 315 SUPERFAMILY Mitochondrial carrier 13 307 IPR023395 -
Seca1g00431 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 205 IPR018108 -
Seca1g00431 315 ProSiteProfiles Solute carrier (Solcar) repeat profile. 17 101 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00431 Seca-Chr1 4926970 4933040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00431 10 315 Chloroplast and Mitochondria Gene Families AT5G15640 75.325 1.29e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00431 K15121 - gmx:100781796 560.066