Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00430 ATGTTGTTGGGTTTTAGTTTAATTTCAGATGCTTATGATCCACTTGACCCAAACAGGAACATCATAATCAAATGGGATATTATAAGTTGGACTCCTGATGGTTATGTTGTTGTTGTTACAATGATCAACTTCCAAAAATGTCGTCACATTGCTTCACCTGGATGGTCACTAGGATGGACATGGGCAAAAAAGGAGGTGATATGGAACATGATGGAAGGGATGACCACTGAACAAGGGGATTGTTCAAAATTTAAGGGAAATATTCCACATAGCTGTAAAAAGGATCCAATTGTTGTAGATTTACTTCTCGGAACACCTTACAACATGCAAGTTGCACATTGTTGCAAAGCTGGGGTGCTTAGCTCATGGCTACAGGATCCAACCAATTCAGTGGCATCATTTCAAGTCACTATTGGTGAAGCTGGAACCACGAACAGAACTGTCAATCTCCCCAAAAACTTCACCTTGAAAACACCAGGACCAGGTTCTACTTGTGGACTAGCAAAAATTGTGAGACCCACAAAAATCACTCAACCAGACAAAAGGAGAGTAACCCAAGCACTCATGACATGGAAAGTGACGTGCACATATTCACAATTTCTAGCTCACAAAACTCCCACTTGTTGTGTCTCTCTCTCTCTCTCCTCTTTTTATAATGATACCATTGTACCCTGCCCAACATGCTCATGTGGCTGCCAGAGTAACTCATCTCAATCAAGAAGTTGTGTAGATGCAGATACTCCACAATTGTCACCAGTTGTTTCTGGCTCCGGAAAGAATAAATTTGCACCTTTGGTTCAATGTACTAATCATATGTGCCCGGTCCAAATCCACTGGCATGTTAAGCATAACTACAAGGAGTACTGGCGTGTGAAGGTTTCTATTAATAATTTGAATTACCATATGAATTATTCCGAGTGGAACTTGGCTATTCAACATCCAAACTTCAACAATTTGATTCAACTGTTCGGTTTCAACTACAAGTCATTAATGACTCGTTACAGTTCAATAAATGACTCATCAATGCTTTATGGAATAAAGTTTTATAATGATATTCTCAACCAACCCGACCCTAATAGTAATGTTGAAACAGAGTTACTCTTTCGAAAGGATAGAGCAACTTTTACTTTTGATAAGGGTTGGGTTTTTCCTCGGAGGATCTACTTCAATGATGCTTATGATCCACTTGACCCAAATGGGAACATCACAATCAAATGGGATATCATAAGTTGGACTCCTTATGGTTATGTTGCTGTTGTTACAATGAACAACTTTCAAAAATACCGTCATATTGCTTCACCTGGTTGGTCACTAGGATGGACATGGGCAAAAGAGGAGGTGATATGGAATATAATGGGAGCAATGACCATTGAACAAGGGAATTGTTCAAAATTTAAGAGAAATATTCCACACAGCTGTAAAAAGAATCCAGTAGTTGTAGATTTACTTCCTGGAACACCTTATAATCAGCAAATTCCAAATTGCTGCAAAGGTGGGATACTTAGTTCATGGCTGCAGGATCCAACCAATGCAGTAGCATCATTTCAAGTTAATGTTGGTGGAGCTGGAACCACAAATAGAACTATCAAAGTCCCGAAAAACTTCACCTTGAAAGCACCAGGACCGGGTTACACTTGTGGGCCAGCAAAAATTGTGAGACCCACTAAATTCATTACACAAGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTGACATGCACATATTCACAATTTCTAGCTCAGAAAACTCCCACTTGTTGTGTATCTCTCTCCTCTTTCTATAATGATACTATTGTACCCTGCCCAACATGTGCATGTGGCTGCCCGAGTAACTCATCTAAGTCAGTTTCTGGATTTGAAAAGAATAAATTTGCACCTTTGGTTCAATGTACTAGTCATATGTGCCCAATCCAAATTAATTGGCATGTTAAGCTCAACTACAAGGAGTATTGGCGTGTGAAGGCTACTATCACTAATTTGAATTACCATATGAATTATTCTGAGTGGAACTTGGTTGTTCAAAACCCAAATTTTGATAATATGACTCAGACATTCAGTTTGAACTACAAGACATTAACACCTTACGATTCAATAAATGATACAATAATGCTTTGGGGAATTAAGTCCTATAATGATATTCTCAATCAAGCTGGGCCTAATAGTAATGTTCAAGCAGAGCTTGTCTTTCGAAAGGACAAAGCAAATTTTACTTATGATAAGGGTTGGGCTTTTCCTCAGAGGATCTACTTCAATGGTGACAACTGTTTGATGCCACCACCTGATGCTTATCCATGGTTTTCTATTAATTCTAGTTCCCAGCAAGAGGTTTTTGGTGAAAATTCTACGCAGTCGCACATAAGTGGAGTTGTGGGAAAACTCAAGGCTTCTTTTGTGAAGTCCATGATTTTTACTTTGGCCATTTTCACTTTTTATACTATTATGTGA 2454 0.3888 MLLGFSLISDAYDPLDPNRNIIIKWDIISWTPDGYVVVVTMINFQKCRHIASPGWSLGWTWAKKEVIWNMMEGMTTEQGDCSKFKGNIPHSCKKDPIVVDLLLGTPYNMQVAHCCKAGVLSSWLQDPTNSVASFQVTIGEAGTTNRTVNLPKNFTLKTPGPGSTCGLAKIVRPTKITQPDKRRVTQALMTWKVTCTYSQFLAHKTPTCCVSLSLSSFYNDTIVPCPTCSCGCQSNSSQSRSCVDADTPQLSPVVSGSGKNKFAPLVQCTNHMCPVQIHWHVKHNYKEYWRVKVSINNLNYHMNYSEWNLAIQHPNFNNLIQLFGFNYKSLMTRYSSINDSSMLYGIKFYNDILNQPDPNSNVETELLFRKDRATFTFDKGWVFPRRIYFNDAYDPLDPNGNITIKWDIISWTPYGYVAVVTMNNFQKYRHIASPGWSLGWTWAKEEVIWNIMGAMTIEQGNCSKFKRNIPHSCKKNPVVVDLLPGTPYNQQIPNCCKGGILSSWLQDPTNAVASFQVNVGGAGTTNRTIKVPKNFTLKAPGPGYTCGPAKIVRPTKFITQDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCACGCPSNSSKSVSGFEKNKFAPLVQCTSHMCPIQINWHVKLNYKEYWRVKATITNLNYHMNYSEWNLVVQNPNFDNMTQTFSLNYKTLTPYDSINDTIMLWGIKSYNDILNQAGPNSNVQAELVFRKDKANFTYDKGWAFPQRIYFNGDNCLMPPPDAYPWFSINSSSQQEVFGENSTQSHISGVVGKLKASFVKSMIFTLAIFTFYTIM. 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00430 817 PANTHER PROTEIN COBRA 391 775 IPR006918 GO:0010215|GO:0016020
Seca1g00430 817 Pfam COBRA-like protein 35 198 IPR006918 GO:0010215|GO:0016020
Seca1g00430 817 Pfam COBRA-like protein 416 579 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00430 Seca-Chr1 4907068 4918442 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00430 390 779 COBRA Gene Family AT3G02210 69.802 0.0 603
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00430 - - gmx:100783820 711.449