Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00425 ATGGCTGTCTTCATGGCAATTTTTGGTGTTGTCTTGGTGCTCTGTTTTTGCTCTGCTCTCTTGAAGTGGAATGAAGTAAGATACAGGATGAAAGGTTTGCCTCCAGGTACAATGGGCTGGCCTGTTTTTGGAGAGACAACTGAGTTTCTTAAGCAAGGTCCTAACTTTATGAAAAACCAGAGGGCAAGGTATGGCAGTTTTTTCAAATCCCACATACTAGGCTGTCCTACCATTGTATCCATGGATCCAGAACTTAATAGATACATACTGATGAATGAAGCAAAAGGGCTTGTTCCTGGATACCCACAATCCATGTTAGATATCTTAGGCAAATGCAACATAGCAGCTGTTCATGGCTCCACTCACAAGTACATGAGAGGGGCACTTCTTTCCATCATTAGCCCCACCCTCATCAGAGATCAGCTTTTACCAAAAATTGATGAGTTCATGAGAACCCACTTAAGTGATTGGGATAACAAAGTCATCAACATTCAAGAGAAAACTAAAGAGGTTTGTATCATCATCCAATCAAAACAAATTCTCAAATATTTTCAACAGATGGCATTTCTCTCATCCTTGAAGCAGATTGCTGGTATGGAATCAAGCTCAATATCTCACCCATTCATGACAGAATTCTTTAAGCTAGTTTTAGGAACTCTCTCCCTCCCTATTGATCTTCCTGGCACAAATTATCGCCGTGGATTACAGGCAAGGAAGAGAATTATCAGCATTCTGAGTAAGCTGCTAGAGGAAAGGAGAGCATCCCAAGAAACCTATGTAGACATGCTTGGTTGTTTGATGGGAAGAGATGATAACAATCGATACAAACTAACTGATGAGGAAATCATTGATCTAATTATTACAATTATGTATTCTGGTTATGAAACTGTTTCAACTACATCAATGATGGCTGTGAAGTACCTCCATGACCATCCCAAAGTTCTTGAAGAAATCAGAAAAGAGCATTTTGCCATAAGAGAGAGGAAAAAGCCAGAGGATCCAATTAACTGTGATGATCTCAAGTCAATGAGGTTTACTCGTGCGGTGATTTTTGAGACCTCGAGATTAGCTACAATAGTTAATGGGGTTCTGAGAAAAACAACTCATGACATGGAATTGAATGGCTATTTGATTCCTAAAGGATGGAGGATATATGTATATACAAGAGAGATCAATTATGACCCATTTCTGTATCATGATCCACTAACTTTTAACCCATGGAGATGGGGTGGTAACAGTCTAGAGTCACAAAGTCACTTCTTGATATTTGGAGGAGGCACCAGACAATGTCCAGGAAAAGAGTTGGGGATAGCAGAAATTTCCACTTTCTTACACTACTTTGTAACTAGATACAGATGGGAAGAAGTAGGAGGAGATAAACTAATGAAATTTCCTAGAGTTGAGGCACCAAATGGACTACACATAAGGGTCTCATCTTATTAA 1443 0.395 MAVFMAIFGVVLVLCFCSALLKWNEVRYRMKGLPPGTMGWPVFGETTEFLKQGPNFMKNQRARYGSFFKSHILGCPTIVSMDPELNRYILMNEAKGLVPGYPQSMLDILGKCNIAAVHGSTHKYMRGALLSIISPTLIRDQLLPKIDEFMRTHLSDWDNKVINIQEKTKEVCIIIQSKQILKYFQQMAFLSSLKQIAGMESSSISHPFMTEFFKLVLGTLSLPIDLPGTNYRRGLQARKRIISILSKLLEERRASQETYVDMLGCLMGRDDNNRYKLTDEEIIDLIITIMYSGYETVSTTSMMAVKYLHDHPKVLEEIRKEHFAIRERKKPEDPINCDDLKSMRFTRAVIFETSRLATIVNGVLRKTTHDMELNGYLIPKGWRIYVYTREINYDPFLYHDPLTFNPWRWGGNSLESQSHFLIFGGGTRQCPGKELGIAEISTFLHYFVTRYRWEEVGGDKLMKFPRVEAPNGLHIRVSSY. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00425 480 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 423 432 IPR017972 GO:0005506|GO:0016705
Seca1g00425 480 Pfam Cytochrome P450 34 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 SUPERFAMILY Cytochrome P450 27 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS P450 superfamily signature 348 359 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS P450 superfamily signature 421 430 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS P450 superfamily signature 292 309 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS P450 superfamily signature 430 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 CDD CYP90-like 60 478 - -
Seca1g00425 480 Gene3D Cytochrome P450 24 479 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS E-class P450 group I signature 420 430 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS E-class P450 group I signature 347 365 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS E-class P450 group I signature 281 298 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS E-class P450 group I signature 387 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS E-class P450 group I signature 430 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PRINTS E-class P450 group I signature 301 327 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca1g00425 480 PANTHER CYTOCHROME P450 26 31 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00425 Seca-Chr1 4850937 4854656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00425 81 480 Cytochrome P450 AT5G38970 67.332 0.0 560
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00425 K09590 - gmx:100785414 855.899