Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00415 ATGGGTTCTCTAGCAGCAGAGAAACTAGTGTTGAGGAAAGGGCCTTGGACTCATGAAGAGGACGAGTTGCTTATTGAATATGTCAGTTTGCATGGAGAGGGAAGGTGGAGCTCCGTGGCCAAGCTCACAGGGTTAAATAGGAGTGGCAAAAGTTGCAGGTTGAGATGGGTAAATTATTTGAGACCGGGCCTGAAGAAAGGTCAATTAAGCCCTCTAGAAGAAGGAATCATTATTGAACTTCATGCTGTTCTGGGAAACAAGTGGTCTACAATAGCAAAGTACTTGCCGGGTAGAACTGATAACGAGATAAAGAACTACTGGAGAACCCACTTCGGGAAGAGAGAGAAAGCTAACAATAATAATAACAAGTTTGAAAGCAGGCGAAGAACGAAAGTGCTAAAGCAGTTGAAATTACAACAAGAGCAGAAACACGACATCAAAAGCATGTCGTCTCATGAGGAGACCAAAAATGAAACAAGAAGAAATATATCTCCTGAGGCTGAGACACACACACAAGGCATGGATTACCAATTGAACCTCCCTTCAATAATGCATCATCAAGAGTTCTCCTCATCCACGTGGCCAGATGATCAAGACCTATGGTTTAGTTTGTGGGAGTTTGATGAACCATCGCAAGGTCTTGCCATGCCAAGTCAAGATAGCTTTGGAAATGGAGGGGAATATTTCATGCAAAACTTCTCATGA 705 0.4298 MGSLAAEKLVLRKGPWTHEEDELLIEYVSLHGEGRWSSVAKLTGLNRSGKSCRLRWVNYLRPGLKKGQLSPLEEGIIIELHAVLGNKWSTIAKYLPGRTDNEIKNYWRTHFGKREKANNNNNKFESRRRTKVLKQLKLQQEQKHDIKSMSSHEETKNETRRNISPEAETHTQGMDYQLNLPSIMHHQEFSSSTWPDDQDLWFSLWEFDEPSQGLAMPSQDSFGNGGEYFMQNFS. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00415 234 CDD SANT 70 111 IPR001005 -
Seca1g00415 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Seca1g00415 234 MobiDBLite consensus disorder prediction 137 165 - -
Seca1g00415 234 Gene3D - 10 66 - -
Seca1g00415 234 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 175 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca1g00415 234 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Seca1g00415 234 SMART sant 12 62 IPR001005 -
Seca1g00415 234 SMART sant 65 113 IPR001005 -
Seca1g00415 234 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Seca1g00415 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 64 IPR017930 -
Seca1g00415 234 MobiDBLite consensus disorder prediction 137 168 - -
Seca1g00415 234 CDD SANT 15 60 IPR001005 -
Seca1g00415 234 FunFam Myb transcription factor 13 65 - -
Seca1g00415 234 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Seca1g00415 234 Gene3D - 69 170 - -
Seca1g00415 234 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Seca1g00415 234 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00415 Seca-Chr1 4695571 4696698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00415 11 209 MYB Transcription Factor Family AT3G30210 51.980 1.01e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca1g00415 Myb_DNA-binding 1.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00415 K09422 - gmx:100785540 278.485