Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00412 ATGGGAAGAGGTAGGGTTGAGTTGAAACGGATCGAGAACAAAACAAGCCAACAAGTGACGTTTTCAAAGAGAAGAAGTGGACTTTTGAAGAAAGCGCATGAAATCTCTGTGCTTTGTGATGCTCAGGTAGCCTTGATTATGTTCTCTACCAAAGGAAAACTTTTTGAGTTTTCCTCTGAATCCAGCAGCATGGAAGACATCCTGGAACGATATGAGAGGCAAAACCATACAGAACTTGCTGGAGCTAACAATGAAACACAGGGAAACTGGTCTTTCGAGTACACCAAGCTCACTGCTAAAGTTCAAGTCTTGGAGAAGAACATAAGGAACTACGTGGGACAAGATCTGGATCCCTTAAGTATGAAAGAGCTTCAGAGTTTGGAGCAACAGCTTGACACATCTCTTAAGCGCATCCGAACAAGAAAGAACCAAGTTATGAATCAATCCATCTCGGAGCTGCATAAAACGGCAAGGGCATTGCAGGAGCAAAACAGCAAGCTAGCAAAGATGAAGGAGAAAGAGAAGACATTAACTGAACGTCCATCCAGCTTCCCAGAAACCATAGGCCAATGTTCATCCACCTTTAACTTATTTTCTCCAGAGGTACTGCCACCACAAAGACTGGTTCCTTCACTAAATCTCAGTGGGACTTTACAAGGAAGAGCATCGGTGGAAGAAATGGCTGAAGGTCAAACCATCCCTAGTAGCAGTGCTCTGATTCCACCATGGATGCTGCATCATCTGACTAGTTAG 753 0.4396 MGRGRVELKRIENKTSQQVTFSKRRSGLLKKAHEISVLCDAQVALIMFSTKGKLFEFSSESSSMEDILERYERQNHTELAGANNETQGNWSFEYTKLTAKVQVLEKNIRNYVGQDLDPLSMKELQSLEQQLDTSLKRIRTRKNQVMNQSISELHKTARALQEQNSKLAKMKEKEKTLTERPSSFPETIGQCSSTFNLFSPEVLPPQRLVPSLNLSGTLQGRASVEEMAEGQTIPSSSALIPPWMLHHLTS. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00412 250 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Seca1g00412 250 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca1g00412 250 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca1g00412 250 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca1g00412 250 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Seca1g00412 250 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca1g00412 250 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Seca1g00412 250 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Seca1g00412 250 Coils Coil 94 114 - -
Seca1g00412 250 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca1g00412 250 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca1g00412 250 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca1g00412 250 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca1g00412 250 Coils Coil 124 180 - -
Seca1g00412 250 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00412 Seca-Chr1 4631433 4638523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00412 1 177 MADS-box Gene Family AT1G26310 59.890 1.72e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca1g00412 K-box 6.9e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00412 K09264 - gmx:100788956 331.643