Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00408 ATGGGTTCTGTTTGTTCTTGTTTGAGTGTTGATGATTTTGAAGATTATATGAATCCAAATAGTCATGTATATAGGAACTGTGTGTGTCTTGGCTGCTTCGTGCAGAACTTCTTGAATGTGTATGCATCAATATTCCGTAGAGGGGAAATGCATTCGATTCCTTCATCTATACAAGGAGCAGCATCTATGACTTCTACAGCATCACTTGATAATTCTCTTTCTGACATGTACCGTTCTCCTCCGAGGCCCTTGCCTTATGATGCAGACCCCAGGTATTTCCGCTCACAGCATGATGGGTTAGTTTCAAGACGTGAGAAGGGTTCAAGTCATTTGAATGAGGAGTCAGAACCTCTAAGAAGTGACGCAGATGTGGACCCAGAATCTTTAAATTCAGGTGGTAAGTGGAATGGAAGTACTGGCGAAGATGGATCAAAGGAATACCGTTCTAAGTCCTCAGTCAGACTTTCATCTGCAAAACTTACAACTGGAACCGATCTTGTCTATGCATCATCAGAAGAGGAGGATGTCTGTCCAACTTGTCTTGAAGAATACACTGAAGAGAATCCGAAGATAGTGACAAAATGCTCTCATCATTTTCATCTTGGTTGCATATATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGGAAGGTAATATTTACTTGA 672 0.4152 MGSVCSCLSVDDFEDYMNPNSHVYRNCVCLGCFVQNFLNVYASIFRRGEMHSIPSSIQGAASMTSTASLDNSLSDMYRSPPRPLPYDADPRYFRSQHDGLVSRREKGSSHLNEESEPLRSDADVDPESLNSGGKWNGSTGEDGSKEYRSKSSVRLSSAKLTTGTDLVYASSEEEDVCPTCLEEYTEENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVIFT. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00408 223 CDD RING-H2_AIRP1-like 173 221 - -
Seca1g00408 223 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Seca1g00408 223 SMART ring_2 177 217 IPR001841 -
Seca1g00408 223 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Seca1g00408 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 222 IPR013083 -
Seca1g00408 223 FunFam E3 ubiquitin-protein ligase At3g02290-like 154 223 - -
Seca1g00408 223 SUPERFAMILY RING/U-box 172 222 - -
Seca1g00408 223 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 57 221 - -
Seca1g00408 223 MobiDBLite consensus disorder prediction 99 123 - -
Seca1g00408 223 MobiDBLite consensus disorder prediction 99 154 - -
Seca1g00408 223 MobiDBLite consensus disorder prediction 72 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00408 Seca-Chr1 4612505 4613982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00408 1 221 C3H Transcription Factor Family AT5G15790 61.504 7.97e-98 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00408 - - gmx:100788192 410.994