Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00401 ATGGCTAGGTCTGCCAAAGGCCATCAAGATGAATTGGACGACGACGACAACGACAACGAAGACCTCTTAACTCCCAACACCTCTTCCTCTCTCAACAAAGTGAAGGTGGATGAACCCAACACGGGGAAGAGGGTGAACCCTCATCGTTCAAAGCATTCAGAGACTGAGCAGCGTAGAAGGAGTAAAATTAACGAAAGATTTCAGGTTCTGAGAGATCTCATACCTCAAAATGATCAAAAAAGAGATAAGGCATCCTTCTTGTTGGAGGTTATTGAGTATATTCAGTTCCTACAAGAAAAGTTACAAATTTATGAACAGACTTATGAAGGATGGAATCAGGAGCCGACAAAATTAATTCCATGGAACCCATTAGAGTCTGACTTCTCAACGACAACTATTCAGAAGGGCCGCACCCCTGGTTCAGCTGCAGAAGCTGTTCCCCTGGCCATGCAAATGCGATTGGACATGTTTGATCCAGTTGTTAGCAGCGGTATTGTAACCCAACATATGCAGGGACCTGTATCTTATGCTGACATGCCTTCTCGTACCCAGCCTCAAACGTGGCTTAGTAAACCAAGTAAGAACAACTATATTGTTCCAGATAATACATTGAAAGAACAGGAGGAGCTGACAATTGAAAGTGGATCAGATAGCATCTCAAGTGCCTATTCCCAGGAGTGA 681 0.4391 MARSAKGHQDELDDDDNDNEDLLTPNTSSSLNKVKVDEPNTGKRVNPHRSKHSETEQRRRSKINERFQVLRDLIPQNDQKRDKASFLLEVIEYIQFLQEKLQIYEQTYEGWNQEPTKLIPWNPLESDFSTTTIQKGRTPGSAAEAVPLAMQMRLDMFDPVVSSGIVTQHMQGPVSYADMPSRTQPQTWLSKPSKNNYIVPDNTLKEQEELTIESGSDSISSAYSQE. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00401 226 MobiDBLite consensus disorder prediction 176 196 - -
Seca1g00401 226 Gene3D - 46 118 IPR036638 GO:0046983
Seca1g00401 226 SMART finulus 53 103 IPR011598 GO:0046983
Seca1g00401 226 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 47 97 IPR011598 GO:0046983
Seca1g00401 226 Pfam Helix-loop-helix DNA-binding domain 49 98 IPR011598 GO:0046983
Seca1g00401 226 MobiDBLite consensus disorder prediction 177 196 - -
Seca1g00401 226 MobiDBLite consensus disorder prediction 22 36 - -
Seca1g00401 226 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 118 IPR036638 GO:0046983
Seca1g00401 226 MobiDBLite consensus disorder prediction 37 62 - -
Seca1g00401 226 FunFam BHLH domain class transcription factor 45 117 - -
Seca1g00401 226 Coils Coil 94 114 - -
Seca1g00401 226 CDD bHLH_AtBIM_like 49 121 - -
Seca1g00401 226 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 122 226 IPR044295 GO:0003700|GO:0006351|GO:0046983
Seca1g00401 226 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00401 Seca-Chr1 4511989 4514517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00401 3 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 36.546 3.96e-38 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca1g00401 HLH 8.4e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00401 - - gmx:100791730 335.495