Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00378 ATGACGATTGGTAGTCTTGCACCTAAGACAGAGAAGAAGAAATCACGAAAGAACAAGGCAGTTGTTGATGAGAATGCACCCTTGTTGCCTAAAAGCCAAGAGAGTGATGCTGGGTTTGATGATTTCAATGGAGCTTCATTTTCTGGGGCTGTTTTTAACTTATCCACTACAATTATTGGTGCTGGGATCATGGCCTTACCTGCAACCTTGAAACAGTTGGGGATGGTGCCTGGCCTTCTTGCAATCCTCATCATGGCTCTATTGACAGAGAAGTCAATTGAGCTTTTGCTTAGGTTTACCAGGGCAGGAAAGGCTGTTTCTTATGCTAGTCTGATGGGGGATTCCTTTGGGAAATATGGAAAAGCTCTGGTGCAGATATGTGTTATAATCAATAACATTGGTGTGCTGATTGTTTACATGATTATAATTGGTGATGTGCTCTCTGGAACATCTTCAGGTGGAGATCATCACTATGGTATCCTTGAAGGATGGTTTGGTGTGCACTGGTGGACAGGGCGGACATTTATTGTCCTTCTTACAACAGTTGCTATATTTGCACCTCTGGCAAGCTTTAAGCGAATTGATTCATTGAGATTCACATCGGCCCTTTCAGTTGCACTAGCAGTTGTTTTTCTTGTCATTGCTGTGGGAATCTCAATTGTCAAGATTATAAGTGGAGGCATTAGCATGCCCAGACTCTTCCCAGTCGTTACTGATCTACCATCAATCTTTGAATTATTCACTGTTGTTCCTGTGTTTGTGACTGCCTATATCTGCCACTACAATGGTATGCAGTTTATTCAAACCTCTGTGTCAATTCACAGCATAGATAATGAACTTGAGGACTCCTCACAGATGCAAGGGGTTGTACGCACCGCCCTTGGTCTATGCTCTTCAGTGTACTTAATGATCAGCTTCTTTGGGTTCCTCCTATTTGGTGAAGGAACTCTTGATGATGTGCTTGCCAATTTTGATACCGATCTTGGAATCCCTTTCGGTTCTGTGCTCAATGATGCTGTTCGTATAAGCTATGCTGCTCACCTCATGCTTGTATTTCCAGTTGTTTTCTATCCATTGCGGCTCAATATAGACGGTCTCTTCTTCCCAAAATCAAGGCCCTTGGTTCTTGATAACTTCCGATTTGCATCAGTCACTATTGCCCTTATCGGTGTTATCTTCCTGGGAGCAAATTTCATACCTAGTATTTGGGATGCTTTCCAGTTCACAGGAGCAACCGCTGCAGTCTGTATTGGATTCATATTTCCAGCTGCCATCACTCTTAGGGACCGCTACAACATAGCAACTAAATCAGACAAGATTCTGTCTATCATTATGATAGTCCTGGCAGTATTCTCAAACGTTGTGGCTATTTACAGTGATGCCTATGCCTTGATCAAGCAGAATAAGTCCAAACGTGAATGA 1422 0.4276 MTIGSLAPKTEKKKSRKNKAVVDENAPLLPKSQESDAGFDDFNGASFSGAVFNLSTTIIGAGIMALPATLKQLGMVPGLLAILIMALLTEKSIELLLRFTRAGKAVSYASLMGDSFGKYGKALVQICVIINNIGVLIVYMIIIGDVLSGTSSGGDHHYGILEGWFGVHWWTGRTFIVLLTTVAIFAPLASFKRIDSLRFTSALSVALAVVFLVIAVGISIVKIISGGISMPRLFPVVTDLPSIFELFTVVPVFVTAYICHYNGMQFIQTSVSIHSIDNELEDSSQMQGVVRTALGLCSSVYLMISFFGFLLFGEGTLDDVLANFDTDLGIPFGSVLNDAVRISYAAHLMLVFPVVFYPLRLNIDGLFFPKSRPLVLDNFRFASVTIALIGVIFLGANFIPSIWDAFQFTGATAAVCIGFIFPAAITLRDRYNIATKSDKILSIIMIVLAVFSNVVAIYSDAYALIKQNKSKRE. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00378 473 PANTHER AMINO ACID TRANSPORTER 43 452 - -
Seca1g00378 473 MobiDBLite consensus disorder prediction 1 25 - -
Seca1g00378 473 Pfam Transmembrane amino acid transporter protein 45 459 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00378 Seca-Chr1 4290691 4295094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00378 3 472 Amino Acid or Auxin Permease AAAP Family AT3G30390 66.596 0.0 632
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00378 K14207 - gmx:100796345 796.578