Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00374 ATGAAAAAAAGATTTGCTGCCCGAAGATGGAACACTGTTAAAAGCAAGGAAGGTAGGGTGTCACAACAAACATTTGTGTGTTTCAAACAGGGGTATAGACTAGAAAAACATCTTAATAAGGTGAATCGGAAGAGGGAGGCTAGACCTATTACTAGGTGTAGTTGTGCTGCCTTTATGAGAGTGCGATATGCACGGGAGACAAGCAGGTGGATTGTGAAAGCATTTAGTGATGAGCATAGCCATCAGATGTTACCTGGGAAATATGAGGGAATGTTGACTTCACATAGGAAGATGAATGAAACAGAAATACTGCAAATGAACAGTATGCAGGATGCTGGAATTGGTGTTACTCAAATTTATGGGCTAGCGGCTAATCAATCAGGAGGATTTAACAATGTTGGTTACAGGAAACGTGATATGTACAATGAAATTGTTAAACAAAGAAGAGGTGTAGCAAGTGATGCGAGGGCGGCAATAGCCTATCTTTGA 489 0.407 MKKRFAARRWNTVKSKEGRVSQQTFVCFKQGYRLEKHLNKVNRKREARPITRCSCAAFMRVRYARETSRWIVKAFSDEHSHQMLPGKYEGMLTSHRKMNETEILQMNSMQDAGIGVTQIYGLAANQSGGFNNVGYRKRDMYNEIVKQRRGVASDARAAIAYL. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00374 162 PANTHER OS01G0519700 PROTEIN 2 157 - -
Seca1g00374 162 Pfam FAR1 DNA-binding domain 11 84 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00374 Seca-Chr1 4227979 4228467 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca1g00374 FAR1 2.9e-14 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00374 - - mtr:112420123 160.999