Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00371 ATGCAGGCTAGTGAGATAACAGGACTCAATTATTTACTCCCTTCAGACCCATCTCCTTACCCTGGTCTCTACAGCATGATTCAGAACAACATCCCCACATTTCAACTTCAAAAATTCTCTAACCAATTCTATGGTTTCCACAACCCTCCTCATCAAGATTTTAGTCCTCAGTCCTCATGTATCAGCAGCAACTCAACTTCTGATGAAGCAGATGAGCAACAACAAAGTCTCATCAATGAGAGGAAACACAGAAGGATGATATCAAACCGAGAATCAGCTCGAAGGTCAAGGATGAGGAAGCAGAAACACCTTGATGAGCTTTGGTCAATGGTGGTTTGGCTTAGGAATGAGAATCACCAGCTACTAGATAAGCTGAACCATGTGTCAGAGTCTCATGATAAAGTCCTTCAAGAGAATGTTCAGCTGAAAGAGGAAGCTTCAGAACTTCGTCAAATGCTATGTGACATGCAGCTACATAGTCCTTATCCTCCCTTAAGCCCCCTTGATGATATCCCTAACAACTCACCCCATGTCAAATCTGATTCCTCAAACCAATCAATCACAAGTTCTATGGACCTGCTTGGCTAA 588 0.4269 MQASEITGLNYLLPSDPSPYPGLYSMIQNNIPTFQLQKFSNQFYGFHNPPHQDFSPQSSCISSNSTSDEADEQQQSLINERKHRRMISNRESARRSRMRKQKHLDELWSMVVWLRNENHQLLDKLNHVSESHDKVLQENVQLKEEASELRQMLCDMQLHSPYPPLSPLDDIPNNSPHVKSDSSNQSITSSMDLLG. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00371 195 CDD bZIP_plant_GBF1 82 133 IPR045314 GO:0003700|GO:0006355
Seca1g00371 195 SMART brlzneu 77 141 IPR004827 GO:0003700|GO:0006355
Seca1g00371 195 MobiDBLite consensus disorder prediction 74 98 - -
Seca1g00371 195 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 79 142 IPR004827 GO:0003700|GO:0006355
Seca1g00371 195 MobiDBLite consensus disorder prediction 54 98 - -
Seca1g00371 195 FunFam BZIP transcription factor 79 130 - -
Seca1g00371 195 Coils Coil 132 152 - -
Seca1g00371 195 MobiDBLite consensus disorder prediction 54 73 - -
Seca1g00371 195 SUPERFAMILY Leucine zipper domain 81 131 IPR046347 GO:0003700|GO:0006355
Seca1g00371 195 MobiDBLite consensus disorder prediction 173 195 - -
Seca1g00371 195 MobiDBLite consensus disorder prediction 158 195 - -
Seca1g00371 195 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 10 163 IPR044521 -
Seca1g00371 195 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 84 99 IPR004827 GO:0003700|GO:0006355
Seca1g00371 195 Gene3D - 79 134 - -
Seca1g00371 195 Pfam bZIP transcription factor 81 139 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00371 Seca-Chr1 4191981 4192568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00371 18 162 bZIP Transcription Factor Family AT3G30530 63.514 1.43e-53 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca1g00371 bZIP_1 1.7e-13 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00371 - - aprc:113863596 334.724