Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00360 ATGTTGGAGAAGGAACTCTCCACCACCACCGCGGCTACATGGGCACGTATCTGTGATACGTGCCGCTCTGCCGCATGCACGGTTTTCTGCCGCGCCGACTCGGCGTACTTGTGCGCCGGGTGCGACGCACGCGTGCATGCGGCAAACCACGTCGCCTCAAGGCACGAGCGCGTGTGGGTCTGTGAGGCCTGTGAGCGTGCCCCGGCGGCGTTTCTATGTAAGGCTGATGCAGCCTCACTCTGCTCTTCCTGTGATGCTGACATCCACTCTGCCAATCCTCTTGCCAGTCGCCACCAGCGTGTCCCTATTCTTCCCATCTCTGGCTGTCTCTATGGCCCCTCTGCTACCCTTTTGGGTGCTGAAGATGATGGCTTTGTTGGTGGTGGTGAGATGGAGGAAGAGGAGGATGAAGGTGTTGATGTGGAGGATGAAGATGAAGCAGCTTCATGGCTGTTGCTGAATCCTATGAAGAACAGTAGCACAAACAACAACAATGAACACAATCAGCAGGGTAATGGGTTCTTGTTTAATGGGGAGGTTGATGAGTATTTGGACCTTGTTGATTGTAATTCATGTGGTGACAACCAGTTCACTACAAATGCTACTGATCATTACAGTCATCATCAGCATCAGCATCAGCATCAGCAGCAACAACATTATGGTGTTCCTCAGAAGAGCTATGTTGGGGATAGTGTGGTTCCAGTTCAGCAACAACAGCAGGCACAGCATTTTCAGCTTGGGTTGGAGTTTGAGTCCTCAAAAACTGGGTTCAGTTACAATGGTTCTATTACTCAAAGTGTTTCAGTTTCATCAATGGATGTTGGTGTTGTACCAGAATCAACAATGAGGGATGTTTCAAATTCCTACTCAAGACCCCCCAAAGGGACAATTGACCTATTTTCTGGACCTCCCATTCAGATGGCTTCCCATCTTACTCCAATGGACAGGGAGGCCAGAGTCCTAAGGTATAGGGAGAAAAAGAAGACAAGAAAATTTGAGAAGACAATCAGGTATGCCTCAAGGAAGGCCTATGCAGAAACTAGACCTCGCATAAAAGGACGATTTGCCAAGAGAACTGATGTAGAAGCTGAAGTTGATCAGATGTTCTCCACAACACTAATGACAGAAGTTGGATATGGCATTGTTCCCTCTTTCTGA 1158 0.4879 MLEKELSTTTAATWARICDTCRSAACTVFCRADSAYLCAGCDARVHAANHVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHQRVPILPISGCLYGPSATLLGAEDDGFVGGGEMEEEEDEGVDVEDEDEAASWLLLNPMKNSSTNNNNEHNQQGNGFLFNGEVDEYLDLVDCNSCGDNQFTTNATDHYSHHQHQHQHQQQQHYGVPQKSYVGDSVVPVQQQQQAQHFQLGLEFESSKTGFSYNGSITQSVSVSSMDVGVVPESTMRDVSNSYSRPPKGTIDLFSGPPIQMASHLTPMDREARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMFSTTLMTEVGYGIVPSF. 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00360 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 18 375 IPR045281 GO:0009909
Seca1g00360 385 Pfam CCT motif 316 358 IPR010402 GO:0005515
Seca1g00360 385 CDD Bbox1_BBX-like 17 60 - -
Seca1g00360 385 SMART bboxneu5 13 60 IPR000315 GO:0008270
Seca1g00360 385 SMART bboxneu5 61 103 IPR000315 GO:0008270
Seca1g00360 385 ProSiteProfiles CCT domain profile. 316 358 IPR010402 GO:0005515
Seca1g00360 385 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Seca1g00360 385 Pfam B-box zinc finger 58 103 IPR000315 GO:0008270
Seca1g00360 385 ProSiteProfiles Zinc finger B-box type profile. 56 103 IPR000315 GO:0008270
Seca1g00360 385 CDD Bbox1_BBX-like 60 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00360 Seca-Chr1 3931450 3934506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00360 1 385 C2C2-CO-like Transcription Factor Family AT3G02380 56.313 1.67e-139 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca1g00360 zf-B_box 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00360 K12135 - tpra:123889374 546.584