LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00358	ATGGGGACGCCAAGAAGAGTAGTTGCTCTTTGTTTTGCATTTTTCTGGTTTTGGAGCTCTGCAAATGCCTTGCTTTCTCCTAAAGGGGTAAACTTTGAAGTGCAAGCTTTAATGGCTATAAAAGATTCTCTAGAGGATCCACATGGTGTTCTAGATAATTGGGATGGTGATGCAGTTGATCCATGTAGCTGGACTATGGTCACTTGTTCTAGTGAAAACTTGGTCATTGGCTTGGGCACTCCAAGTCAAAGTTTGTCTGGTACTCTATCTTCAAGCATAGGCAACTTAACCAACCTTCAGATTGTGTTGCTACAGAATAACAACATAAGTGGACCAATCCCTTTAGAGCTAGGCAAACTTCCTAGGCTTCAAACACTTGATCTCTCTAATAACTTCTTCAGTGGGGAAATTCCTTCCACTCTTGGTCACCTGAGAAGCCTTCAATACCTGAGGCTCAATAATAACAGTCTTGTTGGTGAATGTCCAGAATCACTGGCTAACATGACACAGCTTGCTTTTCTTGATTTGTCTTACAACAATCTTAATGGTCCTGTGCCCAGAATTTTGGCCAAATCATTCAGCATTATTGGCAACCCCCTTATTTGTGCTACTGGAAAAGAACCAAACTGCCATGGGATGACACTGATGCCCATGTCCATGAACTTAAACAATACTGAAGTGTGGTATATTCTGCATTGTCATTGTTCTAGTGCTGATAACAACATCTTTGCTTCCTTAGATGCTTTACCATCAGGCAGACCAAAAACTCATAAAATGGCCATTGCCTTTGGCTTGAGTCTGGGATGTCTCTGTCTGATAGTTCTTGGTTTTGGACTTGTTCTTTGGTGGAGACACAAGCATAATCAACAAGCATTCTTTGATGTTAAAGACCGGCACCATGAAGAAGTCTACCTTGGAAACTTGAAGAGGTTCCAATTCAGAGAGCTCCAGATTGCTACTAACAACTTCAGCAGCAAAAACATACTGGGAAAGGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCCCTGATAGTACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGAAATGCTATTGGAGGAGAGATTCAATTTCAGACTGAAGTTGAAATGATCAGTTTGGCAGTGCACAGAAACCTCCTCAGACTGTATGGATTTTGCATGACACCAACAGAAAGGCTTTTAGTCTATCCATACATGTCCAATGGCAGTGTTGCTTCCCGTTTGAAGGGTAAGCCAGTCCTAGACTGGGGCACAAGGAAGAATATTGCTTTGGGAGCAGCAAGGGGATTACTTTACCTTCATGAGCAGTGTGATCCAAAGATAATTCATAGGGATGTGAAAGCTGCCAACATATTGCTTGATGACTATTGTGAAGCAGTAGTTGGAGATTTTGGATTGGCAAAGCTTTTGGATCACCAAGATTCACATGTCACAACTGCAGTGAGGGGCACTGTGGGGCATATTGCCCCAGAATATCTATCCACAGGACAATCCTCTGAGAAGACTGATGTCTTTGGATTTGGCATTCTCCTCCTTGAATTAATCACAGGCCTGAGAGCCTTAGAATTTGGAAAAGCAGCTAACCAAAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTTGAATTGCTTGTAGACAAGGATCTCAAGAGTAACTATGACAGGATTGAGCTTGAGGAAATGGTTCAAGTGGCTCTCTTGTGTACTCAATACCTTCCAGGCCACAGACCTAAAATGTCTGAAGTGGTACGCATGCTTGAAGGTGATGGGTTAGCAGAAAGATGGGAAGCTTCTCAAAGAGCTGACACAACCAAGTGCAAACCTCCCCATGAGTCCTCTTCATCAGATAGGTATTCTGATCTTACTGATGACTCTTTATTGTTAGTCCAAGCCATGGAGCTCTCAGGACCCAGGTGA	1935	0.4264	MGTPRRVVALCFAFFWFWSSANALLSPKGVNFEVQALMAIKDSLEDPHGVLDNWDGDAVDPCSWTMVTCSSENLVIGLGTPSQSLSGTLSSSIGNLTNLQIVLLQNNNISGPIPLELGKLPRLQTLDLSNNFFSGEIPSTLGHLRSLQYLRLNNNSLVGECPESLANMTQLAFLDLSYNNLNGPVPRILAKSFSIIGNPLICATGKEPNCHGMTLMPMSMNLNNTEVWYILHCHCSSADNNIFASLDALPSGRPKTHKMAIAFGLSLGCLCLIVLGFGLVLWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQIATNNFSSKNILGKGGFGNVYKGVLPDSTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKNIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHQEKKLELLVDKDLKSNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRADTTKCKPPHESSSSDRYSDLTDDSLLLVQAMELSGPR.	645

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00358	644	Gene3D	Phosphorylase Kinase; domain 1	292	399	-	-
	Seca1g00358	644	SUPERFAMILY	Protein kinase-like (PK-like)	300	593	IPR011009	-
	Seca1g00358	644	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	13	603	-	-
	Seca1g00358	644	SUPERFAMILY	L domain-like	33	195	-	-
	Seca1g00358	644	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	442	454	IPR008271	GO:0004672\|GO:0006468
	Seca1g00358	644	SMART	serkin_6	323	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00358	644	FunFam	Somatic embryogenesis receptor kinase 1	292	399	-	-
	Seca1g00358	644	Gene3D	Ribonuclease Inhibitor	30	212	IPR032675	-
	Seca1g00358	644	Pfam	Leucine rich repeat N-terminal domain	33	70	IPR013210	-
	Seca1g00358	644	Pfam	Leucine rich repeat	121	181	IPR001611	GO:0005515
	Seca1g00358	644	MobiDBLite	consensus disorder prediction	603	628	-	-
	Seca1g00358	644	FunFam	Somatic embryogenesis receptor-like kinase 1	400	612	-	-
	Seca1g00358	644	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	30	212	-	-
	Seca1g00358	644	MobiDBLite	consensus disorder prediction	603	624	-	-
	Seca1g00358	644	Gene3D	Transferase(Phosphotransferase) domain 1	400	612	-	-
	Seca1g00358	644	ProSiteProfiles	Protein kinase domain profile.	323	578	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca1g00358	644	ProSitePatterns	Protein kinases ATP-binding region signature.	329	351	IPR017441	GO:0005524
	Seca1g00358	644	Pfam	Protein kinase domain	324	590	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00358	Seca-Chr1	3910210	3914745	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00358	10	644	Receptor kinase-like Gene Family	AT5G16000	77.916	0.0	1001

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Seca1g00358		Pkinase	2.4e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00358	-		-	gmx:100798412	1139.79