Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00335 ATGGCTTCAACAAGCCCTTCTCCTAATGCTTCCCCTTCTGCAGTGCCTCCAGCATCTCCTGGTGTTGTATCACCACCTGCTTCTTCATCTTCCACCCCACCATCACCTCCCATTTCTCAACCCAATCAAACATCCAATTCCCCTGCCCCTTCATCTCCTTCTGACCCATCAGCTTCACCTCCTTCTCCTCCACAGGCAGTGCCTGCAAGCCCTCCTCCTTCCCCATCCCTTTCTCCTCCACCATCATCTACACCGCCACCAACCTTGCCCCCTCCTTCACCACCAGCTTCTCCACCACCATCACCACCAGCATCTCCAACACCACCTGTTGCAACATCACCCCCAACACCAGCTACCACTGCCCCTCCTCCAGCTGTGACTTCACCTTCCCTTCCAAATTTGTCCCCACCACCTCCATCAGCTGGTTCCCCTCCGCCTCAATCCTCAAAGACACCACCCTCTCAGGCAATTTCGCCATCTCCCCCACCTCCAGCCAATGTGCCAAAGCCACCATCCACCAATTCTCCTCCTGCACCACAAGCAAAGCCACCAAAACGTACTCCTTCACCTCCTTCACATGCATCCCCTCCATCAGTTTCTCAATCTCCTCCTTCTCCTTCAGCTGATGTTCCCCCTCCATCTTCATTGCCATCAACTCCTCCTTCCACTGATGTCCCCCCTCCATCCTCATTGCCATCAACTCCTCCTTCAGTTCCTTCAGGTTCTTCACCTCCAGTTTCTTTGCCCAGTCCCCCTACTAATAAAACAGCAGCTGGGGGTCCAACTGTGCCACTACCCTCTATTCCAACTGAGAAACCCACTGCTAGATCAACTAATGGTGGCACTGATAATATAGCCACAAATACCACACCTTCACATTCAGGAGGGTTAAATACTGGAGGAGCTGTGGCTATTGGTGTTGTAGTTAGTTTTATTGTCCTCAGCCTTCTTGTCATGGCTGTGTGGTTTGTACAGAAAAAGAAGAAGAAGGAAACAGGATCAAGAGTCGGTTATGCTGTACCTTCTCCATTTGCCTCATCTCAAAATTCAGGTACCTTGTTCTTGAAGCCACAGTCTCCAGCCAACTTTATAGGTAGTGGCTCTGGTAGTGATTTCGTGTATTCACCATCAGAGCCAAGTGGAGTGAGTAGTTCAAGAGCATGGTTCACTTATGAAGAACTTATCCAAGCAACAAATGGGTTTTCAGCACAAAATCTGTTGGGAGAAGGTGGATTTGGTTGTGTCTACAAAGGTTTGCTCATAGATGGAAGAGAAGTGGCTGTGAAACAGCTCAAAGTTGGTGGTGGGCAAGGGGAACGTGAATTCAGGGCAGAAGTTGAGATTATTAGCCGTGTACATCATCGTCATCTGGTTTCCTTGGTGGGTTACTGTATATCTGAGCATCAAAGATTGCTTGTCTACGACTATGTTTCCAACAATACTCTTCATTACCATCTACATGGTGAAAACCAACCAGTTTTGGATTGGCCTACCAGAGTCAAGGTTGCCGCCGGTGCAACTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCATCGAGATATTAAGTCATCAAACATCCTTCTTGATCACAACTTTGAAGCTCAAGTTTCAGACTTTGGGCTTGCAAAATTAGCATCGGATTCATATACACACGTAACTACACGTGTAATGGGAACCTTTGGGTATATGGCACCAGAATATGCCACAAGTGGGAAATTGACTGAAAAGTCTGATGTATATTCCTTCGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCCTCTCAGCCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGGCCTCTATTGTCTGAAGCACTTGATAATGAAGATTTTGACATATTGGTGGATCCAAGACTGGGAAAGAACTACAACAGAAATGAAATGTTTCGAATGATTGAGGCTGCTGCAGCCTGCGTTCGCCACTCTTCAGTTAAGAGGCCAAGGATGAGTCAGGTAGTAAGAGCTTTAGATTCCTTAGATGAGTTTTCAGATCTCAATAATGGAATGAAACCTGGGCAGAGCTCAGTGTTTGATTCTGCACAGCAATCTGCACAAATCAGAATGTTTAGGAGGATGGCTTTTGGCAGCCAAGATAGTTCCAGTTTCTTTAATGAGTCTCAGAGTAGTTGGAGGAGTAGAGAGCAGCATGACTCTACAACTATGTTCCCCCAAAACAAATCTGGGTCTTGGAACGTTTGA 2253 0.4731 MASTSPSPNASPSAVPPASPGVVSPPASSSSTPPSPPISQPNQTSNSPAPSSPSDPSASPPSPPQAVPASPPPSPSLSPPPSSTPPPTLPPPSPPASPPPSPPASPTPPVATSPPTPATTAPPPAVTSPSLPNLSPPPPSAGSPPPQSSKTPPSQAISPSPPPPANVPKPPSTNSPPAPQAKPPKRTPSPPSHASPPSVSQSPPSPSADVPPPSSLPSTPPSTDVPPPSSLPSTPPSVPSGSSPPVSLPSPPTNKTAAGGPTVPLPSIPTEKPTARSTNGGTDNIATNTTPSHSGGLNTGGAVAIGVVVSFIVLSLLVMAVWFVQKKKKKETGSRVGYAVPSPFASSQNSGTLFLKPQSPANFIGSGSGSDFVYSPSEPSGVSSSRAWFTYEELIQATNGFSAQNLLGEGGFGCVYKGLLIDGREVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVSNNTLHYHLHGENQPVLDWPTRVKVAAGATRGIAYLHEDCHPRIIHRDIKSSNILLDHNFEAQVSDFGLAKLASDSYTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPIGDESLVEWARPLLSEALDNEDFDILVDPRLGKNYNRNEMFRMIEAAAACVRHSSVKRPRMSQVVRALDSLDEFSDLNNGMKPGQSSVFDSAQQSAQIRMFRRMAFGSQDSSSFFNESQSSWRSREQHDSTTMFPQNKSGSWNV. 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00335 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Seca1g00335 750 SMART serkin_6 401 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00335 750 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 311 722 IPR047117 -
Seca1g00335 750 Gene3D Transferase(Phosphotransferase) domain 1 477 694 - -
Seca1g00335 750 MobiDBLite consensus disorder prediction 10 43 - -
Seca1g00335 750 FunFam Proline-rich receptor-like protein kinase PERK8 373 476 - -
Seca1g00335 750 Gene3D Phosphorylase Kinase; domain 1 375 476 - -
Seca1g00335 750 MobiDBLite consensus disorder prediction 723 750 - -
Seca1g00335 750 MobiDBLite consensus disorder prediction 53 251 - -
Seca1g00335 750 ProSitePatterns Protein kinases ATP-binding region signature. 407 429 IPR017441 GO:0005524
Seca1g00335 750 SUPERFAMILY Protein kinase-like (PK-like) 377 674 IPR011009 -
Seca1g00335 750 ProSiteProfiles Protein kinase domain profile. 401 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00335 750 MobiDBLite consensus disorder prediction 271 296 - -
Seca1g00335 750 Pfam Protein tyrosine and serine/threonine kinase 404 674 IPR001245 GO:0004672|GO:0006468
Seca1g00335 750 CDD STKc_IRAK 407 677 - -
Seca1g00335 750 FunFam proline-rich receptor-like protein kinase PERK8 477 689 - -
Seca1g00335 750 MobiDBLite consensus disorder prediction 1 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00335 Seca-Chr1 3668579 3677546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00335 271 733 Trihelix Transcription Factor Family AT5G38560 69.767 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca1g00335 PK_Tyr_Ser-Thr 1.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00335 - - gmx:100784873 893.649