Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00329 ATGGATGCTCGCCGAGCTCCACGCGCCGTCATTGACCCCAAGGTTCGCAAAGTCGGGTTCTTCGCCCCACCCGAAAATCCTCAAACGGCTCAACCCGACCCGTTTTCGTTCGACATTTCTCCATCCGCCAACTCACTCTCTCCGGTCATGATCCCGCCGCCGCTTCACTCGTCGGAAAATCTCAATCTCCATGCTCGCCCCGCCGCTGCTGCCGCAGTTTCCCCTTCCGGCGAGGAATCCTCCGCCGCCGCACGGAGCTATAGCAGCAGCTCATCGGAGCTCTTCCCTGCTCCGATGTCCCCCGCACCGTCTTCCTACTCGAGCAGGACCTTTGTCGGCGGCGATGGAGATTTCTTCTTCGATGGCGCTGCTGCATCTCCGCGTCGCCGAGGCAGCGGTGGAGGAAAGGTGGCGTCGTCATTTCCTCGCGGCGGATTCGACTTGACGGCGATGAAAGCGAGTAGCGTTCCTGCAAGTGAATTGACGACAGTTTCGGTGGTGAATGCTGCTGCTTCCCTTGCAATTCACGGCAAAGGAGGAGGGTCAACAATGGAAGTGAAAGACCAAGCTATGAATGCACAACCGAAGAAAGATAAGACCACAAAGGCTGAAAGACGTGCCCTTCAAGAAGCTCAGCGAGCTGCAAAGGCTGCTGCAAAAGCTGAAGGAAATAAAGCATCTGGAACTGTGACTTCAGTGAATGCAAAATCAGCTAAAATTGCCAAGCCCCCGCAGAAAGTTGATAATGCTTCAGTTGCTGCCTCTGAGAAGAAGGGAGGTGACCGTCCATCAGAAAAGGATAGAAAGAAAGATGTTCCTCAACCACGCATGCAATATGATGATAAGAGCAGAGTGGAGAAGGCTAAGCGGCGTGCTGTGGTAAAACAAACTGAAGCCAGGAACAGAGTTGAACTGTTCAGGCATTTGCCACAGTATGAACATGGGAGTCAGCTTCCTGATCTTGAAGTGAAGTTTTTCCAGCTGGATCCTGTGCATCCTGCAATTTATAAGGTGGGTTTGCAGTATCTGTCTGGAGATATATCTGGTGCTAATGCTCGTTGTATTGCTATGCTTCAAGCATTTCAAGAGGCCATCAAAGACTACAGAGTTCCCCCTGAGAAGACTCTTGTGAGAGACTTGACAGCAAAAATAAGTAGCTATGTTTCATTCCTTATTGAGTGTCGACCTCTTTCTATCAGCATGGGAAATGCAATTAGATTTGTTAAAAGTCGAATTGCCAAGCTACCTCTGACACTGTCTGAGTCAGAATCAAAAACTTCTCTTCAGTCAGATATTGAGCGTTTCATAAATGAGAAGATTATACTTGCTGACAAGGTGATAGTTAAGCATGCTGTCACAAAAATAAGAGATGGGGATGTTCTTCTTACTTATGGGTCGTCATCAGCAGTTGAAATGGTACTATTACATGCACATGAGTTAGGAAAACAGTTTCGAGTTGTAGTAGTAGACTCTCGTCCTAAGCTTAGAGGGAAACTTTTGCTTCGTAGGCTGGTGGAGAAAGGTCTTAGCTGTACATACACTCATATAAATGCTGTTTCCTACATAATGCATGAAGTTACTCGAGTTTTTCTGGGTGCTTCATCAGTTTTGGCTAATGGAACAGTGTATTCAGGAGTTGGGACTGCATGTGTTGCAATGGTTGCTCATGTGTTCTGTGTCCCTGTTATAGTATGTTGTGAGGCTTATAAGTTTCATGAAAGGGTACAGCTTGATTCAATATGCTCAAATGAACTCGGTGATCCGGATGTCATTTCAAAGGTTCATGGTAGAGAGGATGTTAACCTCTTGGATGCTTGGGCCAAAACTGAAAATCTGCAACTTCTAAATCTGATGTATGATGCAACACCTTCAGATTATGTTTCAATGATAGTCACAGATTATGGCATGGTCCCCCCTACAAGTGTTCCTGTAATTGTAAAGGAATATAGTAGAGAACAGGTGTGGATGTGA 1971 0.4693 MDARRAPRAVIDPKVRKVGFFAPPENPQTAQPDPFSFDISPSANSLSPVMIPPPLHSSENLNLHARPAAAAAVSPSGEESSAAARSYSSSSSELFPAPMSPAPSSYSSRTFVGGDGDFFFDGAAASPRRRGSGGGKVASSFPRGGFDLTAMKASSVPASELTTVSVVNAAASLAIHGKGGGSTMEVKDQAMNAQPKKDKTTKAERRALQEAQRAAKAAAKAEGNKASGTVTSVNAKSAKIAKPPQKVDNASVAASEKKGGDRPSEKDRKKDVPQPRMQYDDKSRVEKAKRRAVVKQTEARNRVELFRHLPQYEHGSQLPDLEVKFFQLDPVHPAIYKVGLQYLSGDISGANARCIAMLQAFQEAIKDYRVPPEKTLVRDLTAKISSYVSFLIECRPLSISMGNAIRFVKSRIAKLPLTLSESESKTSLQSDIERFINEKIILADKVIVKHAVTKIRDGDVLLTYGSSSAVEMVLLHAHELGKQFRVVVVDSRPKLRGKLLLRRLVEKGLSCTYTHINAVSYIMHEVTRVFLGASSVLANGTVYSGVGTACVAMVAHVFCVPVIVCCEAYKFHERVQLDSICSNELGDPDVISKVHGREDVNLLDAWAKTENLQLLNLMYDATPSDYVSMIVTDYGMVPPTSVPVIVKEYSREQVWM. 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00329 656 MobiDBLite consensus disorder prediction 31 46 - -
Seca1g00329 656 Gene3D - 443 649 IPR042529 -
Seca1g00329 656 MobiDBLite consensus disorder prediction 19 108 - -
Seca1g00329 656 Pfam Initiation factor 2 subunit family 347 639 IPR000649 GO:0044237
Seca1g00329 656 SUPERFAMILY NagB/RpiA/CoA transferase-like 303 649 IPR037171 -
Seca1g00329 656 MobiDBLite consensus disorder prediction 258 293 - -
Seca1g00329 656 MobiDBLite consensus disorder prediction 191 211 - -
Seca1g00329 656 MobiDBLite consensus disorder prediction 79 108 - -
Seca1g00329 656 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 40 653 - -
Seca1g00329 656 MobiDBLite consensus disorder prediction 190 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00329 Seca-Chr1 3608734 3615149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00329 1 656 Eukaryotic Initiation Factors Gene Family AT5G38640 66.029 0.0 818
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00329 K03680 - gmx:100785938 956.051