Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00323 ATGTTCCCTTCAACTAATTACACCTCCTCAAGCCCTTACCCTTGTTTCCCTTCTTCTTCTTCTTCATTATACCCTCCTTTCACTTTCCTTAACCTTGAAAATGCTTCTGCAAACAACACTTTTCATCATATCCATGATCCAGTACTTTCTGTTCCTTACATCCCCACCACTACTCCTCATCATCATCATGCTGCAATCCCTGAAACACTCACTAATTGGGCAGTTTCTGACTGTTCAGCTTCAATGCTCAAGCAAGATCTAAGTGTTTCTCACTATGGAATCTCCAATTTCCTCACAAAGAAACCAGCAAAGAAGGCAGTGAAGAAAGACAGGCACAGCAAGATTCACACATCTCAGGGTTTGAGGGACAGAAGAGTGAGATTGTCCATTGATATTGCAAGAAAGTTCTTTGATCTTCAAGACATGTTAGGGTTTGACAAAGCAAGCAACACCCTTGATTGGCTCTTCACAAAGTCAAAGAAAGCAATTGAAGAGCTAACTAGAAGCAAGAGTACTAGTAATAATGATAATGATAATGATGATGATACCGTATCCTCTTCTGAAGGTGAAGTGGTTTCTCTCATCAACAACCAACAAAAGGTGATGGATCCCAACAAAGAGAGGAAGTTGAAAAGGGCAAAGATGAAGGAACCAAAGGGAAAAGAAAGGACAAGGATTGTGGAGGAGGAGGAGGAGCAAGAAAGGTACCCTGAAAATCCTCAAACCCTTCACCAATTGATGAGGTCATCACCTTTTCATTCTCAACTTGTGGGTAGTGAATTGCCAAGAAATGATGATCATGAAGATGATGATGAGTTCAATGTTATTGAGGAATCTATAGTGATCAAGAGAAAGAAGGTGAAGCAATCTTCAATCTCTTCTTCTTCTCATCATCACCAAAACATTGTGATCCCTAAGGAAACAAGTTTTAACAACAGTGACTCTAATAACTCCTTCCCCATGTCTCCAAATTGGGATGCTAATGGACGCTCCAATTTTTGTGCAATAGCCACCATGAACCTATCCACAGGGCTTCAAATCTTTGGAAAATCTTGGGAGGAGTGCACCAGTCCTCACCTATACTAA 1086 0.407 MFPSTNYTSSSPYPCFPSSSSSLYPPFTFLNLENASANNTFHHIHDPVLSVPYIPTTTPHHHHAAIPETLTNWAVSDCSASMLKQDLSVSHYGISNFLTKKPAKKAVKKDRHSKIHTSQGLRDRRVRLSIDIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIEELTRSKSTSNNDNDNDDDTVSSSEGEVVSLINNQQKVMDPNKERKLKRAKMKEPKGKERTRIVEEEEEQERYPENPQTLHQLMRSSPFHSQLVGSELPRNDDHEDDDEFNVIEESIVIKRKKVKQSSISSSSHHHQNIVIPKETSFNNSDSNNSFPMSPNWDANGRSNFCAIATMNLSTGLQIFGKSWEECTSPHLY. 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00323 361 MobiDBLite consensus disorder prediction 202 238 - -
Seca1g00323 361 MobiDBLite consensus disorder prediction 167 240 - -
Seca1g00323 361 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 100 317 IPR005333 GO:0003700
Seca1g00323 361 Pfam TCP family transcription factor 107 231 IPR017887 -
Seca1g00323 361 ProSiteProfiles TCP domain profile. 108 166 IPR017887 -
Seca1g00323 361 MobiDBLite consensus disorder prediction 186 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00323 Seca-Chr1 3567664 3569355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00323 45 178 TCP Transcription Factor Family AT1G67260 50.000 1.45e-35 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca1g00323 TCP 5.5e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00323 - - gmx:100786452 314.309