Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00316 GGAACAACATATATACTAAAAGTGGATCCAAGAAGGCATGGAAAGTTGCCACTATCTTCACAAGCACCAGAGGCTAAAGAAGAGAAAGAAGACACAGTAAATGATGAGTTTGATGCTTATGCATCTTCTTGGTGTGCTCCAGACAGTGACATGTCTGCCATGGTTTCAGCTCTCACTCAAGTTATGGGAACAACCAATCGGAACCCACACATGCCACAATCAACCTCTTTTCCTGAACAACCTCACCCACACCCATCTCAACCTCTTCTAGATCAAGAGGTGAGAAAGAAAGCACACTACAGAGGAGTAAGACAGAGACCATGGGGAAAATGGGCAGCAGAGATTCGTGATCCAAAGAAAGCAGCAAGAGTGTGGCTTGGAACCTTTGACACAGCTGAGGATGCAGCCATTGCATATGACAAAGCAGCACTCAAATTCAAAGGCACAAAAGCTAAGCTTAATTTCCCTCAAAGAGTTCAACTTCAAGCTCAAGGGAACACTACTAATCTTGTTGGTTATAGTGATAGTGCCATTCAACAAAGTTGTGTTGATGATGTTGCCCTTCCACCTCCATCATTCTCCACACAACAACAACAACAAGTTTTCCCAGATCTGTTTCAGTATGCACAGATTCTTTCAAGTGATGATGCACAATTCCCTTATTACACATCCAATCTTTTCAATCAACAACAACCTTTCACTTCACAATCTTCTTCTTCCTCCTCACCCAATAACTTCTACAATCAGCAACAACATTATGAAGAAGAAGAAGGACATCATCGATACCCAGACCAGTAA 798 0.4223 GTTYILKVDPRRHGKLPLSSQAPEAKEEKEDTVNDEFDAYASSWCAPDSDMSAMVSALTQVMGTTNRNPHMPQSTSFPEQPHPHPSQPLLDQEVRKKAHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAIAYDKAALKFKGTKAKLNFPQRVQLQAQGNTTNLVGYSDSAIQQSCVDDVALPPPSFSTQQQQQVFPDLFQYAQILSSDDAQFPYYTSNLFNQQQPFTSQSSSSSSPNNFYNQQQHYEEEEGHHRYPDQ. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00316 265 ProSiteProfiles AP2/ERF domain profile. 99 156 IPR001471 GO:0003700|GO:0006355
Seca1g00316 265 MobiDBLite consensus disorder prediction 231 265 - -
Seca1g00316 265 MobiDBLite consensus disorder prediction 64 87 - -
Seca1g00316 265 CDD AP2 98 156 IPR001471 GO:0003700|GO:0006355
Seca1g00316 265 Gene3D AP2/ERF domain 98 158 IPR036955 GO:0003700|GO:0006355
Seca1g00316 265 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Seca1g00316 265 PANTHER DNA-BINDING DOMAIN 53 235 IPR044808 GO:0003700|GO:0009873
Seca1g00316 265 MobiDBLite consensus disorder prediction 231 251 - -
Seca1g00316 265 SUPERFAMILY DNA-binding domain 99 157 IPR016177 GO:0003677
Seca1g00316 265 FunFam Ethylene-responsive transcription factor 2 98 157 - -
Seca1g00316 265 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Seca1g00316 265 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Seca1g00316 265 SMART rav1_2 99 162 IPR001471 GO:0003700|GO:0006355
Seca1g00316 265 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00316 Seca-Chr1 3470249 3475225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00316 54 227 AP2-EREBP Transcription Factor Family AT5G13330 47.778 3.48e-45 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca1g00316 AP2 3.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00316 - - gmx:100796624 259.61