Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00314 ATGGCGTTGGAGCAACAAATTTCTAACCCTAACAACTCCGTTGACTCCCACCGTAACGGAGAGCCGCCGCCGTCCTCCGCCGCAGATGGCGGAGATGATGGGAGGCCAGCGGCGAGGCTGCCACGTTGGACGAGGCAGGAAATTCTGGTCCTCATACACGGCAAGGCCGACGCTGAGAGCCGGTTCAAGCCTGGCCGAGCCTCCGGTTCAGCGTCTGGTTTGAGCGAGCCGAAATGGGGGTTGGTATCGTCATACTGCAAGAAGCACGGTGTGAACCGGGAACCGGTTCAGTGCCGGAAGCGGTGGAGCAACCTCGCCGGCGATTATAAGAAGATTAAGGAGTGGGAGTCTAGGGTAAGGGATGAAACGGAGTCGTTTTGGCTGATGAGGAACGATTTGAGGAGAGAGAGGAAATTGCCGGGTTATTTTGACAAGGAGGTGTTCGATATTCTCGACGCGCCGTCGCAGGCGGCTGCCGCAGCGGCTCCATCTACTGCTACTGTGTCAGAGACGGTGGTGGTTGATGAGGAGGTGCACCTTTACGATAGTAATAGAAGGGTGGGGGGTGAAGATGGATTGTTCTCTGATGGTGAGAGGGACGAGGTTTTGGCTTCTACCAAAGATGTTCATGTTCCTGCCCCTGTTCCTATCTCAGTATTATTTATAGAGGAGCAATATCAACCGCACCTCCATGGCTGCCAAGGGGAAGAAGGCAATGCTCAAGGTGTCACCAATGAGAAACAGCCAGCCTCAAATCCAGAAATGGGTTCTACATCACAAGGGGGACGAAAGAGGAAGCGGTTTGAAAACGATGGGGAGGAAGAAACTTTGCAAAGTCAATTAATTGATGTGTTGGAAAAAAATGGCAAGATGCTACGTGATCAACTTGAGGCTCAGAACATCAATTTCCAGTTGGACCGCCAGCACCAGAAAGACACTGCAAGTAACATAGTTGCTGTACTTGATAAGCTTGCAGATGCTCTAGGGAGAATTGCTGATAAATTGTAG 1008 0.5179 MALEQQISNPNNSVDSHRNGEPPPSSAADGGDDGRPAARLPRWTRQEILVLIHGKADAESRFKPGRASGSASGLSEPKWGLVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESRVRDETESFWLMRNDLRRERKLPGYFDKEVFDILDAPSQAAAAAAPSTATVSETVVVDEEVHLYDSNRRVGGEDGLFSDGERDEVLASTKDVHVPAPVPISVLFIEEQYQPHLHGCQGEEGNAQGVTNEKQPASNPEMGSTSQGGRKRKRFENDGEEETLQSQLIDVLEKNGKMLRDQLEAQNINFQLDRQHQKDTASNIVAVLDKLADALGRIADKL. 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00314 335 Coils Coil 282 302 - -
Seca1g00314 335 ProSiteProfiles Myb-like domain profile. 35 106 IPR001005 -
Seca1g00314 335 MobiDBLite consensus disorder prediction 238 259 - -
Seca1g00314 335 MobiDBLite consensus disorder prediction 1 20 - -
Seca1g00314 335 Pfam Myb/SANT-like DNA-binding domain 42 128 IPR044822 -
Seca1g00314 335 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASR3 3 335 - -
Seca1g00314 335 MobiDBLite consensus disorder prediction 260 274 - -
Seca1g00314 335 MobiDBLite consensus disorder prediction 1 41 - -
Seca1g00314 335 MobiDBLite consensus disorder prediction 231 277 - -
Seca1g00314 335 CDD GT1 41 113 - -
Seca1g00314 335 Gene3D - 43 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00314 Seca-Chr1 3433851 3437280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00314 42 114 Trihelix Transcription Factor Family AT1G33240 32.877 6.09e-07 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Seca1g00314 Myb_DNA-bind_4 8.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00314 - - gmx:100788594 484.952