Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00313 ATGCAATTCGCAAAGCTCGATGACTCTCCTATGTTCCGCAAGCAGATACAATGCATGGAGGAAAGTGCTGAATCTTTGAGAGAGAGAAGTTTAAAGTTTTACAAAGGATGTAGAAAATACACCGAAGGACTTGGGGAGGCATATGATGGAGACATTGCATTTGCAAGTGCCCTAGAAACTTTTGGTGGTGGGCATAATGATCCCATTAGTGTGGCTTTTGGAGGCCCTGTTATGACCAAATTTACCATAGCCTTAAGAGAAATTGGAACATACAAGGAAGTTCTTCGATCACAGGTTGAGCATATGTTGAATGACAGATTGCTTCAGTTTGTCAATATTGATCTGCAAGAGGTCAAGGAGGCACGGAAACGCTTTGACAAGGCTAGTCTTATTTATGACCAGACTCGTGAAAAGTTTTTGTCCCTGAGAAAAGGCACAAAAAGTGATGTAGCTGCTGCCCTAGAAGAGGAGCTTCATAGTGCAAGATCTACATTTGAGCAAGCTCGGTTTAATCTGGTTACTGCCTTATCAAATGTTGAAGCAAAGAAGAGATTTGAATTTTTGGAAGCAGTCAGTGGGACCATGGACGCACATCTTCGTTACTTCAAACAGGGGTATGAATTATTGCACCAAATGGAGCCATATATTAACCAGGTCTTGACTTATGCTCAGCAATCAAGAGAAAGGTCGAATTATGAGCAAGCAGCTCTCAATGAAAGAATGCAAGAGTACAAACGGCAGATTGATCGAGAGAGTAGGTGGGCTTCAAATGGTTCAAATGGGTCTCCTAATGGAGATGGTATACAAGCCATTGGTAGAAGTTCACATAAGATGATAGAGGCAGTTATGCAATCTGCTGCAAAGGGAAAGGTTCAAACTATTCGGCAAGGTTATCTCTCAAAGCGTTCGTCAAATTTAAGGGGGGACTGGAAAAGGAGGTTTTTCGTTCTTGATAGCCGAGGAATGTTGTATTACTACCGTAAACAGTGCAGCAAATCATCTGGGTCTAGTAGCCAACATTCTGGTCAGCGGAATAGTTCTGAGCTTGGTTCTGGACTTTTAAGTCGATGGCTGTCTTCTCATCATCATGGTGGGGTACATGATGAGAAATCTGTTGCTCATCACACTGTGAACCTGCTTACATCAACAATCAAAGTCGATGCTGACCAATCAGATTTGAGGTTTTGCTTCCGGATCATTTCGCCAACAAAGAACTATACTTTGCAGGCAGAGAGTGCGCTGGACCAAATGGATTGGATTGAAAAAATCACAGGTGTTATTGCCTCATTGCTGAGTTCTCAGATTCCCGAAAGGTTGTTACCTGCCAGTCCAATGGGAAGTGGTGATAATAGGTCTACCAGTGAGAGTAGTTCTTTTGAAAGTTCAGATTTCGATCACACTACTATTGAAGAATTTGCAGCTGATAGAAGTCTTGCTTCTGCGCATCTGGAGCGCCCCTCAAGAAGTTTGCACCAGCAACGATCCTGTATTAAAAATGAGAAGCCAATTGATGTGTTGCGAAGAGTTTGTGGGAATGATAGATGTGCTGATTGTGGTGCCCCTGAACCTGATTGGGCATCTCTAAATCTTGGTGTTCTTGTTTGCATTGAGTGTTCTGGTGTTCATCGAAACCTTGGTGTGCACATATCAAAGGTGAGGTCTCTGACATTGGATGTTAAAGTGTGGGAACCTTCTGTGATAAGTTTATTTCAGTCTCTTGGGAATACTTTTGCCAACTCAGTATGGGAGGAACTATTACAATCAAGAAGTGCCTTTCAGGTTGATCTTGTCTCCACAGGGTAA 1803 0.426 MQFAKLDDSPMFRKQIQCMEESAESLRERSLKFYKGCRKYTEGLGEAYDGDIAFASALETFGGGHNDPISVAFGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLQFVNIDLQEVKEARKRFDKASLIYDQTREKFLSLRKGTKSDVAAALEEELHSARSTFEQARFNLVTALSNVEAKKRFEFLEAVSGTMDAHLRYFKQGYELLHQMEPYINQVLTYAQQSRERSNYEQAALNERMQEYKRQIDRESRWASNGSNGSPNGDGIQAIGRSSHKMIEAVMQSAAKGKVQTIRQGYLSKRSSNLRGDWKRRFFVLDSRGMLYYYRKQCSKSSGSSSQHSGQRNSSELGSGLLSRWLSSHHHGGVHDEKSVAHHTVNLLTSTIKVDADQSDLRFCFRIISPTKNYTLQAESALDQMDWIEKITGVIASLLSSQIPERLLPASPMGSGDNRSTSESSSFESSDFDHTTIEEFAADRSLASAHLERPSRSLHQQRSCIKNEKPIDVLRRVCGNDRCADCGAPEPDWASLNLGVLVCIECSGVHRNLGVHISKVRSLTLDVKVWEPSVISLFQSLGNTFANSVWEELLQSRSAFQVDLVSTG. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00313 600 ProSiteProfiles ARF GTPase-activating proteins domain profile. 500 583 IPR001164 GO:0005096
Seca1g00313 600 Pfam Putative GTPase activating protein for Arf 503 588 IPR001164 GO:0005096
Seca1g00313 600 PANTHER CENTAURIN/ARF 3 590 IPR045258 GO:0005096
Seca1g00313 600 MobiDBLite consensus disorder prediction 253 269 - -
Seca1g00313 600 FunFam ADP-ribosylation factor GTPase-activating protein AGD3 4 251 - -
Seca1g00313 600 Coils Coil 151 171 - -
Seca1g00313 600 SMART 5bar 11 218 IPR004148 GO:0005515|GO:0005737
Seca1g00313 600 Gene3D Arf GTPase activating protein 487 598 IPR038508 -
Seca1g00313 600 SUPERFAMILY PH domain-like 293 443 - -
Seca1g00313 600 Pfam BAR domain of APPL family 6 233 IPR004148 GO:0005515|GO:0005737
Seca1g00313 600 ProSiteProfiles PH domain profile. 292 428 IPR001849 -
Seca1g00313 600 CDD BAR_SFC_plant 14 215 IPR035670 -
Seca1g00313 600 CDD ArfGap 503 586 - -
Seca1g00313 600 Gene3D Arfaptin homology (AH) domain/BAR domain 4 251 IPR027267 -
Seca1g00313 600 SUPERFAMILY BAR/IMD domain-like 6 315 IPR027267 -
Seca1g00313 600 Gene3D - 285 437 IPR011993 -
Seca1g00313 600 Coils Coil 227 247 - -
Seca1g00313 600 Pfam PH domain 294 427 IPR001849 -
Seca1g00313 600 MobiDBLite consensus disorder prediction 446 463 - -
Seca1g00313 600 CDD PH_ACAP 295 432 - -
Seca1g00313 600 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 482 600 - -
Seca1g00313 600 SUPERFAMILY ArfGap/RecO-like zinc finger 499 590 IPR037278 -
Seca1g00313 600 MobiDBLite consensus disorder prediction 439 463 - -
Seca1g00313 600 SMART PH_update 293 430 IPR001849 -
Seca1g00313 600 MobiDBLite consensus disorder prediction 248 270 - -
Seca1g00313 600 PRINTS HIV Rev interacting protein signature 554 575 IPR001164 GO:0005096
Seca1g00313 600 PRINTS HIV Rev interacting protein signature 512 531 IPR001164 GO:0005096
Seca1g00313 600 PRINTS HIV Rev interacting protein signature 531 548 IPR001164 GO:0005096
Seca1g00313 600 SMART arf_gap_3 500 600 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00313 Seca-Chr1 3420906 3431535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00313 512 591 C2H2 Transcription Factor Family AT4G21160 51.852 9.23e-20 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00313 K12489 - gmx:100798227 1102.43