Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00312 ATGCCTCATGTTGGAGCTTTGGAGCTTCTGAGATTGATTAGTGGTTGTGGCTTTGTTTGTTCTGCTTTAATGTTTAAGAAAACACACACCCCTTCTTCTCTTGCAAGGGAATTTTTGGCATTCCAGCCACTTGTTCTTCTGTTCTTGTTTAGCTTGCACCATAACACTGTGCAATGCCAGGGAAGGTTGAGTAAACACATCTCTTCAGAACCTCCCTCACCTTCAAGGCTATTATCACCACCATCATCAGAATACAAGGATGACCCTAGGAAGATTATTGTCAGCATTGTCTTAGGAGCAGTTACTGGACTAGTTGGTTCTGTTCTCTTTGCATTTGTAGTTCGTTGTGTTGTTAAGTATCTGAACAGAACACCAATCCTCAAGGGTCCTGTCATATTCTCCCCAAAAATTGACCCCAAGACACTCCAATCAGCTTTGGCAAAAGAAAACCATTTGCTTGGTTCTAGTTCAAATGGGAAATACTACAAAACAGTACTTGACAATGGTCTCACTATTGCAGTCAAAAGGCTAACACCCTTTGAGAGCAATTCCCCTGAGGCTAGGAGAAAATCAGTGAAGAGGCAGATACAGATGGAGCTAGAGCTTCTTGCAAGCTTAAGACATAGGAACTTGATGAGCTTAAGGGCCTATGTTCGTGAACCTGATGGGTTCTCATTGGTTTATGATTATGTATCCACAGGGAGTCTTGCAGATGTAATGAATAGAGTGAGGGAAAATGAGTTGCAGCTTGGTTGGGAGGTTAGGCTAAGGATTGCTGTTGGTGTGGTGAAGGGTCTTCAGTATCTTCACTTCACTTGTGTGCCTCAGATTCTGCACTTCAACTTGAAGCCCACAAATGTGATGTTGGATGCAGAGTTTGAACCCAGATTGGCAGATTATGGATTGGCTAAACTTCTTCCCAACTTGGATAGAGGGACATCTGTCAACAGCCCTCCTGAATGTTTCCATAATTGCAGCAGGTACACAGACAAAAGTGACATCTTCAGTTTTGGCATGATATTAGGTGTTTTATTAACCGGTAAGGACCCTACTGATCCATTCTTTGGAGAAGCAGCCAGTGGGGGAAGTTTGGGATGTTGGCTGAGGCACTTGCAACAAGCAGGTGAGGCAAGGGAAGCTCTAGATAAGAGTATTTTGGGGGAAGAAGGGGAAGAAGATGAGATGTTAATGGCTGTAAGGATTGCTGCTGCATGCCTTTCTGATATGCCTGCAGATAGGCCTTCCAGTGATGAACTTGTTCACATGCTAACGCAACTGCACAGTTTTTGA 1290 0.4364 MPHVGALELLRLISGCGFVCSALMFKKTHTPSSLAREFLAFQPLVLLFLFSLHHNTVQCQGRLSKHISSEPPSPSRLLSPPSSEYKDDPRKIIVSIVLGAVTGLVGSVLFAFVVRCVVKYLNRTPILKGPVIFSPKIDPKTLQSALAKENHLLGSSSNGKYYKTVLDNGLTIAVKRLTPFESNSPEARRKSVKRQIQMELELLASLRHRNLMSLRAYVREPDGFSLVYDYVSTGSLADVMNRVRENELQLGWEVRLRIAVGVVKGLQYLHFTCVPQILHFNLKPTNVMLDAEFEPRLADYGLAKLLPNLDRGTSVNSPPECFHNCSRYTDKSDIFSFGMILGVLLTGKDPTDPFFGEAASGGSLGCWLRHLQQAGEAREALDKSILGEEGEEDEMLMAVRIAAACLSDMPADRPSSDELVHMLTQLHSF. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00312 429 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 231 428 - -
Seca1g00312 429 SUPERFAMILY Protein kinase-like (PK-like) 150 423 IPR011009 -
Seca1g00312 429 FunFam Inactive leucine-rich repeat receptor-like protein kinase CORYNE 139 230 - -
Seca1g00312 429 MobiDBLite consensus disorder prediction 63 85 - -
Seca1g00312 429 CDD STKc_IRAK 153 426 - -
Seca1g00312 429 ProSiteProfiles Protein kinase domain profile. 147 429 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00312 429 Gene3D Phosphorylase Kinase; domain 1 133 230 - -
Seca1g00312 429 Gene3D Transferase(Phosphotransferase) domain 1 231 428 - -
Seca1g00312 429 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 52 425 - -
Seca1g00312 429 Pfam Protein kinase domain 149 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00312 Seca-Chr1 3414511 3417806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00312 57 426 Receptor kinase-like Gene Family AT2G31880 31.796 3.59e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Seca1g00312 Pkinase 1.6e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00312 - - gmx:102664172 709.138