Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00302 ATGGCATTCCCAGAAGGTGGTGCCGAAGAAGACACCAACATCGATGTTCACACCACACGTGGCACCCCCATTCGGTATCTTCCCCTCGATCACCTCTACTCCGCCACGTCACCTTGCAGTGGCTCCGCTAATGTCATGTCCAAGAAGGTGAAAGCTCGCAAGTTCAGCCTCAACAACAACAACGGTGACAGTGACCCGCCGCTCGATCATCATCACACCAGTAAGAAAACGACGTCGTCTTTGCCGGTGCTTCCCCCTCCTAAGCCCCCTCTTCTACATGTCTACTCTCGCCGACGCAAGAGGCGTTCCTCCCCGACGTCGGGCCGAGTCAGGGAGAATGGGGACTCCGAGAAGAGGGTTCTGAAGAAGAGGAAAACTGGGAGCACCGAGTTGGAGAAATTGGGCGTGGATTTGAACGCGGTGGGGAACCTAGATGGGCCTCGATTGAGGGAATGTCGCACTCAAATTGGGAATTCTGGCATTGCTGGCAACAACAACGCCAAGTTTGGTGGTGGTTCTCTGGAGAATTTCCCCAAGTTGCTGCCGGAATCTCGCACTGTGAAGAGATGGGTCATGTTGAATTTTGAGAATGCTGATCCTGAGGCATTCATTGGATTACGATGCAAGGTTCATTGGCCCATGGATTTAAGATCGTACACCGGTCACGTCAACGGTTATGATGTGGAAACTAAGATACATCATATCAAGTATGATGATGGTGATGAGGAAAATTTAATTCTTTCAAATGAAAATATAAAGTTTCATGTTTCCCGTGACGAGATGAAACATTTAAAATTGAGTTACGCCAAAGTTCGTGACAGTAACGTCTCTGATTATGACATTGAAGAGATGCTTGCATTGGCTGCAAGTTTGGATGATTGCCAAGACTTTGAGGCAGGAGATATCATATGGGCTAAGCTAACAGGCCATGCAATGTGGCCAGCTGTTGTTCTCGATGAATCATTTGCTAGCAACTGTAAGGGTTTAAAAACATTTATAGGAGGAAGATCAGTTCCTGTCCAATTTTTCGGCACCCATGACTTTGCAAGGGTTAGACTGCAACAGGTGAAATCATTTCTCAGTGGACTTCTTACTGATCTGCACTCAAAGTGCAAGAAACTTAGTTTTTTTGAAGGTTTAGAAGAGGCAAAAAGGTATTTAAGTGAACAGAAGCTTCCTTTGGAGATGCTAGAATTGCAGAAGAGATGTACAGCTGATGACAATAACAATGTAAGTGGAGAAGATGGAGGATGTACAGATTCAGGTGAAGATTGTTTAAATGACAACGGAGTTTGGGTGGCACCTGAAAACATTGAAACTTTTCCTTATGAAGTAGGAGACTTGCAAATTCTAAGCCTTGGAAAAATAGTTGAAGATTCTGCATCTTTTGGGGATGGAAGATCCATCTGGCCTGAAGGGTACACAGCAGTGAGGAAGTTTACTTCTGTTACTGACCCTAAAGTATCTGTGCCTTATAAGATGGAGGTTTTGAGAGATCCAGAATCCAAAGTCCGGCCTCTATTTAGATTGACAGTTGATGGTGGTGAGCAGTTCAATGGCTATACACCATCTACTTGCTGGAATCAAGTATACAAAAGGATAAAGAAAATGGAAAAGGATGTTTCTGAAGGTTCTGTTGCTGAAGGTGGGGTAGAAGGGGGCTACGAATCTGGTTCTGATATGTTTGGTTTCTCCAATCCTAAAGTGGCTAAATTGATACGGGGATTATCTAAACGCAAAGTCTCTTTGAAGAACTCAATTTCCAAGTTAGGTTCTAGAAGACATAATGACTTGCCTCTTGGTTATAGGCAGGTTCATATTAATTGGTTTGATCTTGATAAGTGCAATGTGTGCCATATGGATGAGGAGTACGAGAACAATCTGTTTCTGCAGTGTGACAAATGCAGAATGATGGTCCATGCTAGATGCTATGGAGAACTGGAACCTGTTAATGGAGTGCTATGGTTGTGCAACTTATGTCGTTCGGGTGCTCCTCCCCCACCTTGTTGCTTATGTCCACTCATAGGCGGTGCAATGAAGCCTACGACAGATGGCAGATGGGCACATTTGGCTTGTGCCATGTGGATACCTGAAACTTGCTTAGCTGATGTCAAGAGAATGGAGCCTATTGATGGTTTGAATAGAATTAGTAAGGACCGCTGGAAGTTGTTATGCAGCATATGCGGTGTATCTTATGGTGCCTGCATCCAATGTTCAAACAATTCTTGTCGAGTGGCATACCATCCACTTTGTGCACGTGCTGCTGGTCTCTGTGTTGAGCTTGAGAACGAGGACAGGCTTTATCTACTTTCTGTTGATGATGATGAAGATCAGTGCATTCGCTTACTTTCCTTCTGCAAGAAACATAGGCAGCCATCTCATGAACATTCTGTTGCTGATGAACGTATTGTGCGAGTTGCTGGTCAGTGTTCAGATTATGAACCACCACCCAATCCATCTGGTTGTGCTCGAAGTGAGCCATATGATTACTTTGGTAGGAGAGGCCGAAAAGAACCTGAAGCACTTGCAGCTGCATCGTTGAAACGTTTGTTTGTAGAGAATCAATCTTACTTAGTAGGTGGATACTGCCAACATGGATTGTTAAACAACCCAGAGCCTTCTGGCAGAGGAGTGTGCTCTAAATTCTTTTGTACCCAGCAAAGGCTGAGGACCTCTCTGATAGACTCTTCAGACAGCATACTTTCTATTGCCGAAAAATACAAGTACATGAGGGAAACCTTTCGGAAACGACTAGCATTTGGTAGGAATAATTGTCTTTAA 2781 0.4448 MAFPEGGAEEDTNIDVHTTRGTPIRYLPLDHLYSATSPCSGSANVMSKKVKARKFSLNNNNGDSDPPLDHHHTSKKTTSSLPVLPPPKPPLLHVYSRRRKRRSSPTSGRVRENGDSEKRVLKKRKTGSTELEKLGVDLNAVGNLDGPRLRECRTQIGNSGIAGNNNAKFGGGSLENFPKLLPESRTVKRWVMLNFENADPEAFIGLRCKVHWPMDLRSYTGHVNGYDVETKIHHIKYDDGDEENLILSNENIKFHVSRDEMKHLKLSYAKVRDSNVSDYDIEEMLALAASLDDCQDFEAGDIIWAKLTGHAMWPAVVLDESFASNCKGLKTFIGGRSVPVQFFGTHDFARVRLQQVKSFLSGLLTDLHSKCKKLSFFEGLEEAKRYLSEQKLPLEMLELQKRCTADDNNNVSGEDGGCTDSGEDCLNDNGVWVAPENIETFPYEVGDLQILSLGKIVEDSASFGDGRSIWPEGYTAVRKFTSVTDPKVSVPYKMEVLRDPESKVRPLFRLTVDGGEQFNGYTPSTCWNQVYKRIKKMEKDVSEGSVAEGGVEGGYESGSDMFGFSNPKVAKLIRGLSKRKVSLKNSISKLGSRRHNDLPLGYRQVHINWFDLDKCNVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVNGVLWLCNLCRSGAPPPPCCLCPLIGGAMKPTTDGRWAHLACAMWIPETCLADVKRMEPIDGLNRISKDRWKLLCSICGVSYGACIQCSNNSCRVAYHPLCARAAGLCVELENEDRLYLLSVDDDEDQCIRLLSFCKKHRQPSHEHSVADERIVRVAGQCSDYEPPPNPSGCARSEPYDYFGRRGRKEPEALAAASLKRLFVENQSYLVGGYCQHGLLNNPEPSGRGVCSKFFCTQQRLRTSLIDSSDSILSIAEKYKYMRETFRKRLAFGRNNCL. 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00302 926 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 661 792 IPR013083 -
Seca1g00302 926 Pfam PWWP domain 300 387 IPR000313 -
Seca1g00302 926 CDD PWWP_AtATX1-like 300 393 - -
Seca1g00302 926 ProSiteProfiles FYR domain FYRN motif profile. 440 499 IPR003888 GO:0005634
Seca1g00302 926 MobiDBLite consensus disorder prediction 106 128 - -
Seca1g00302 926 CDD PHD_ATX1_2_like 614 660 IPR042010 -
Seca1g00302 926 SMART PWWP_4 297 360 IPR000313 -
Seca1g00302 926 ProSiteProfiles PWWP domain profile. 299 362 IPR000313 -
Seca1g00302 926 ProSitePatterns Zinc finger PHD-type signature. 615 660 IPR019786 -
Seca1g00302 926 SUPERFAMILY FYVE/PHD zinc finger 606 676 IPR011011 -
Seca1g00302 926 ProSiteProfiles Extended PHD (ePHD) domain profile. 666 790 IPR034732 -
Seca1g00302 926 SMART PHD_3 614 661 IPR001965 -
Seca1g00302 926 SMART PHD_3 724 790 IPR001965 -
Seca1g00302 926 Pfam PHD-finger 627 661 - -
Seca1g00302 926 FunFam Histone-lysine N-methyltransferase 664 792 - -
Seca1g00302 926 ProSiteProfiles Zinc finger PHD-type profile. 612 663 IPR019787 -
Seca1g00302 926 Pfam F/Y-rich N-terminus 446 496 IPR003888 GO:0005634
Seca1g00302 926 MobiDBLite consensus disorder prediction 56 128 - -
Seca1g00302 926 Pfam F/Y rich C-terminus 505 577 IPR003889 GO:0005634
Seca1g00302 926 SUPERFAMILY Tudor/PWWP/MBT 293 394 - -
Seca1g00302 926 Gene3D - 287 398 - -
Seca1g00302 926 CDD ePHD_ATX1_2_like 675 789 IPR041956 -
Seca1g00302 926 SMART fyrc_3 507 591 IPR003889 GO:0005634
Seca1g00302 926 ProSiteProfiles FYR domain FYRC motif profile. 503 589 IPR003889 GO:0005634
Seca1g00302 926 SMART fyrn_3 455 499 IPR003888 GO:0005634
Seca1g00302 926 Gene3D - 441 581 - -
Seca1g00302 926 PANTHER PHD FINGER PROTEINS 48 924 - -
Seca1g00302 926 CDD Tudor_Agenet_AtEML-like 204 254 - -
Seca1g00302 926 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 660 IPR013083 -
Seca1g00302 926 Pfam PHD-zinc-finger like domain 668 789 - -
Seca1g00302 926 SUPERFAMILY FYVE/PHD zinc finger 715 754 IPR011011 -
Seca1g00302 926 Gene3D - 203 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00302 Seca-Chr1 3313323 3326813 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00302 584 760 C2H2 Transcription Factor Family AT3G14740 38.462 4.32e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca1g00302 zf-HC5HC2H_2 3.6e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00302 - - gmx:100806736 1545.02