Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00299 ATGACTCAGGCAGTGGAGGTGCTGAATCGGTATGGAACGGATCTGGTAGGTGAAGCTAGGGGTTCAGATTCGGAGTGTTTGGCGGGTTTTGAGTGTTTCCTGAACATTGTGAGGGCACTGGGAATGGGATCGTGCATCTCGGAGGTTGGGGCTAGTGGTGGTTCCCCTCCTCTTCTCCCTTATTCGCCTGATTCCAATTTGGACGGTGGGAAGAAAAGGAGGTTGAGGGGTTCAACTTCCTTTGATTATAAAGTGCCTGGGAGGATGTTCTTGAATGGGTCAAGCGAGGTTGCGTCCATGTACTGCAAGCAGGGTAGAAAAGGGATCAACCAAGATGCCATGCTTGTTTGGGAGAACTTTTGTTCAAAGGAGGACACTATTTTTTGTGGTGTTTTTGATGGTCATGGACCTTATGGCCATAGGGTTGCAAAGAAAGTTAGGGATTCTTTCCCTCTAAAGCTTAATGCACAATGGGATTTGCATCATAAGAATAAAGATGGACTCAGTGTCAGTGATGACAACAGTGCTGCTGGAAGTTATAATTCTGAAGGGCAATTTAAACTGGTTGATGAGAAACCTAGTCCTGTTGACCATGAGCTTGATGGAACAAATACTATTTTGACACTAAGAGAATCCTTTTTGAAGGCTTGTAAAATTATGGACAAAGAACTAAAACTGCATCCCGATATTGATTGCTTTTGTAGTGGGACTACAGCAGTTACCTTGGTCAAGCAGGGGCTGAATCTTGTTATTGGAAATGTGGGGGATTCAAGAGCTGTATTGGGTACCCGAGATCATGATGATTCTCTTATTGCGGTTCAGTTGACCATTGACCTTAAGCCAAATATTCCAAGTATCTCTCTTCCTCTCTTCTCTGTGTGTGTGTGGGAAGAAGAGAGGATCAGGCTTCGTAAAGGAAGGGTTTTTTCCCTTCAGAATGAACCTGAGGTGGCTCGAGTTTGGCTACCTAACTCTGATTTCCCAGGTCTAGCTATGGCACGGGCTTTTGGAGATTTTTGCCTGAAGGACTTTGGGTTGATTGCTGTTCCAGATGTCTCATATCACCGCCTTACTGAGAAGGATGAATTTGTTGTTTTAGCAACAGATGGGATTTGGGATGTTTTATCAAACGAAGAAGTTGTGGACATTGTGGCATCTGCTCCACGATCTACTGCTGCTCGAAAATTGGTTGAGTCGGCTGTTCAAGCATGGAGGACAAAATTCCCTTTTTGTAAGGTTGATGATTGTGCCGCAGTTTGCCTCTTCTTTGATTCAAATTCCGACTTAAAGTCCGCATGTAGCACAGACAAGTTGACACCAGAGGCATCAAATGACCAATATGAGCAGTCATCTCTACTTGGTGAGAAGGGAAATGAAGTGGAAGCTGAAAAGCACCAGCAATAG 1404 0.4452 MTQAVEVLNRYGTDLVGEARGSDSECLAGFECFLNIVRALGMGSCISEVGASGGSPPLLPYSPDSNLDGGKKRRLRGSTSFDYKVPGRMFLNGSSEVASMYCKQGRKGINQDAMLVWENFCSKEDTIFCGVFDGHGPYGHRVAKKVRDSFPLKLNAQWDLHHKNKDGLSVSDDNSAAGSYNSEGQFKLVDEKPSPVDHELDGTNTILTLRESFLKACKIMDKELKLHPDIDCFCSGTTAVTLVKQGLNLVIGNVGDSRAVLGTRDHDDSLIAVQLTIDLKPNIPSISLPLFSVCVWEEERIRLRKGRVFSLQNEPEVARVWLPNSDFPGLAMARAFGDFCLKDFGLIAVPDVSYHRLTEKDEFVVLATDGIWDVLSNEEVVDIVASAPRSTAARKLVESAVQAWRTKFPFCKVDDCAAVCLFFDSNSDLKSACSTDKLTPEASNDQYEQSSLLGEKGNEVEAEKHQQ. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00299 467 CDD PP2Cc 97 423 IPR001932 -
Seca1g00299 467 MobiDBLite consensus disorder prediction 434 467 - -
Seca1g00299 467 Pfam Protein phosphatase 2C 204 401 IPR001932 -
Seca1g00299 467 Gene3D - 92 432 IPR036457 -
Seca1g00299 467 SUPERFAMILY PP2C-like 92 425 IPR036457 -
Seca1g00299 467 ProSiteProfiles PPM-type phosphatase domain profile. 97 423 IPR001932 -
Seca1g00299 467 PANTHER PROTEIN PHOSPHATASE 95 421 IPR015655 GO:0004722|GO:0006470
Seca1g00299 467 MobiDBLite consensus disorder prediction 434 453 - -
Seca1g00299 467 SMART PP2C_4 91 421 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00299 Seca-Chr1 3264835 3269878 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00299 42 438 PP2C-type Phosphatase Gene Family AT3G02750 55.134 1.68e-148 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00299 - - gmx:100802479 799.275