Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00292 ATGTGTGTGCAAGTTGTTCAAGATATGGAGAAAGTTGATAACAGAAGGGTGTCATGGCCTTTGCATTTTGATATCTTGCATACCCAGATGGATAACAGGGAAAAAGGTTCTTCTTTTAGAACTCCCAGAGACCGGATCAGTGCTGAAAATTCGTTTCCTCTGGAAAGCATATGTGAGGATACAGAGATTGCAGAGAAAAAACAGAACCTGATAAACTTTGTTCCTACTCTTCGGTCTGGAGAATGGTCTGATATTGGAGGTCGCCCTTACATGGAGGATACCCACATATGCATTGGAGACTTGGCAAAGAAATTTGGTTATAATGTACTCTGCGAGGAATCTATTTCCTTTTATGGTGTATTTGATGGACATGGAGGGAAGAGTGCTGCACAATTTGTCCGCGATCATCTACCAAGAGTGATTGTTGAGGATGCTGACTTCCCTCTGGAACTTGAGAAGGTGGTCACAAGGTCATTTTTGGAGACTGATGCAGAGTTTGCAAAAACATGCTCTATTGAGTCTTCCCTGTCTTCTGGTACAACTGCACTGACTGCAATTATATTTGGAAGGTTAGCACTCACCCCTGCAGTTATTTGGCCGTCCTTACTTGTAGCCAATGCTGGAGACTGCCGGGCTGTTTTGTCCCGTTCTGGAGTGGCCATAGAAATGTCAAAAGATCACAGGCCCTTGTGCATCAAAGAAAGAATGAGGATTGAGTCCATGGGTGGATTCATTGATGATGGTTACCTGAATGGACAGTTAGGTGTCACTCGTGCTCTAGGTGATTGGCATCTTGAAGGAATGAAGGAAATGAGTGGAAGTGGTGGACCATTGAGTGCTGAGCCTGAACTTAAATTGATGACATTGACCAAAGAAGACGAATTCTTGATAATTGGCAGTGATGGAATCTGGGATGTTTTCCGAAGCCAAAATGCTGTGGATTTTGCTAGAAGGAGGCTTCAAGAGCACAATGATGTGAGACAGTGTTGTAAGGAAATAATAGGGGAAGCAATAAAGAGAGGAGCAACAGACAATTTGACAGTTGTGATGGTATGCTTTCACTCAGATCCACCACCACCTCTGGTTGTAGAAAGGCCTAGAGTCAGGAGAAGCATATCTGCTGAGGGACTTCAGAATCTTAAATACTTGCTACAAGGATAG 1161 0.435 MCVQVVQDMEKVDNRRVSWPLHFDILHTQMDNREKGSSFRTPRDRISAENSFPLESICEDTEIAEKKQNLINFVPTLRSGEWSDIGGRPYMEDTHICIGDLAKKFGYNVLCEESISFYGVFDGHGGKSAAQFVRDHLPRVIVEDADFPLELEKVVTRSFLETDAEFAKTCSIESSLSSGTTALTAIIFGRLALTPAVIWPSLLVANAGDCRAVLSRSGVAIEMSKDHRPLCIKERMRIESMGGFIDDGYLNGQLGVTRALGDWHLEGMKEMSGSGGPLSAEPELKLMTLTKEDEFLIIGSDGIWDVFRSQNAVDFARRRLQEHNDVRQCCKEIIGEAIKRGATDNLTVVMVCFHSDPPPPLVVERPRVRRSISAEGLQNLKYLLQG. 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00292 386 CDD PP2Cc 78 353 IPR001932 -
Seca1g00292 386 PANTHER PROTEIN PHOSPHATASE 2C 65 351 IPR015655 GO:0004722|GO:0006470
Seca1g00292 386 SMART PP2C_4 68 351 IPR001932 -
Seca1g00292 386 FunFam Probable protein phosphatase 2C 22 61 356 - -
Seca1g00292 386 Pfam Protein phosphatase 2C 90 345 IPR001932 -
Seca1g00292 386 Gene3D - 59 356 IPR036457 -
Seca1g00292 386 ProSiteProfiles PPM-type phosphatase domain profile. 78 353 IPR001932 -
Seca1g00292 386 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169
Seca1g00292 386 SUPERFAMILY PP2C-like 69 354 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00292 Seca-Chr1 3223604 3227000 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00292 46 386 PP2C-type Phosphatase Gene Family AT2G25620 56.560 1.52e-131 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Seca1g00292 PP2C 3.1e-64 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00292 K14803 - gmx:100782648 627.476