LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca1g00287	ATGGCCACCACTCCAGCTAGGTCTTTTCTCCAAGTAGCCGCAACGGAGGAGGCTGCACCCCCTCTTAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTTCTTTAGTCACCGGACAACTTCTTGGGTTGGATGTTGGCAGTGTTCTTGAAGTTACTAACTGCTTCCCCTTTCCAATGAGGGAGGAGGATGAGGAAATTGAAGCTGACGGTGCTAATTACCAGCTTGAAATGATGAGGTGCCTGAGGGAGGTTAATGTTGACAATAATACCGTTGGATGGTACCAGTCTACATTGCTTGGTTCCTTTCAGACTGTGGAGCTGATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGATCAAGGTGTCCTAGCTCTGAAGGCCTTGAAGCTTTCTGATTCATTCATGGAACTCTATCGGAGCAATAATTTTACTGGGGAGAAGTTGAGGGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCTTTGCTATTTAATGCTGATCATGTTTGTTATATATTTATATATCAGATCAAAGTTTCAAATTCTGCCCTCATCAGTGCTTTTATGACAGAGCTTGAACCTGACAGCCCAGTCACCCAGTGTGATTATGATCGTCTGCAATTGTCGACCAGTTCATTAATGGAGAGAAATATGGAATTTTTGATTGAATGCATGGATGACTTGTCAATGGAACAACAAAAGTTCCAATTCTACTATCGTAGCTTGTCTCGTCAGCAAGCTCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCGGAGAACATGTCACGTAAAGCTGCTGGAGAGGAGCCTTTGCCTGAGGAAGATCCTTCAAACCCCATTTTCAAGCCACTCCCCGAGCCATCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGTGTTTCAGGGCAGAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGATTGA	1059	0.4344	MATTPARSFLQVAATEEAAPPLRVVQIEGLVILKIIKHCKDHSPSLVTGQLLGLDVGSVLEVTNCFPFPMREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTLLGSFQTVELIETFMNYQENIRRCVCIIYDPSRSDQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVDIFEEIPLLFNADHVCYIFIYQIKVSNSALISAFMTELEPDSPVTQCDYDRLQLSTSSLMERNMEFLIECMDDLSMEQQKFQFYYRSLSRQQAQQQAWLQKRRAENMSRKAAGEEPLPEEDPSNPIFKPLPEPSRLESFLITNQISNYCNQINGVSGQSFNRLYLMKALHED.	353

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca1g00287	352	ProSiteProfiles	MPN domain profile.	25	158	IPR037518	-
	Seca1g00287	352	Pfam	C-terminal region of eIF3h	144	204	IPR045810	-
	Seca1g00287	352	Pfam	C-terminal region of eIF3h	203	351	IPR045810	-
	Seca1g00287	352	FunFam	Eukaryotic translation initiation factor 3 subunit H	4	228	-	-
	Seca1g00287	352	MobiDBLite	consensus disorder prediction	284	309	-	-
	Seca1g00287	352	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED	17	336	-	-
	Seca1g00287	352	CDD	MPN_eIF3h	23	301	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Seca1g00287	352	SMART	pad1_6	24	157	IPR000555	GO:0005515\|GO:0008233\|GO:0008237
	Seca1g00287	352	Gene3D	Cytidine Deaminase, domain 2	3	227	-	-
	Seca1g00287	352	Hamap	Eukaryotic translation initiation factor 3 subunit H [EIF3H].	20	352	IPR027524	GO:0003743\|GO:0005737\|GO:0005852
	Seca1g00287	352	Pfam	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	23	126	IPR000555	GO:0005515\|GO:0008233\|GO:0008237

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca1g00287	Seca-Chr1	3175807	3180295	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca1g00287	88	352	Eukaryotic Initiation Factors Gene Family	AT1G10840	79.623	7.80e-154	431

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca1g00287	K03247		-	gmx:100814297	637.106