Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00286 ATGACAAGTTTTCAGCCTCACTGGTCATTTTTAACTTTGCTGATTTCAGTTTCCTATTTGCTGAATTGCTTAGGAAACAATGACATGCCTGTCCTATTGAATGATGATGTTCTTGGCCTTATTGTGTTTAAATCAGACCTTCATGACCCTTCTTCATATCTTGCTTCATGGAATGAAGATGATGTGAGTCCTTGTTCATGGCAGTTTGTGCAATGCAATCCTCAGAGTGGAAGAGTTTCAGAGGTCTCATTGGATGGCTTAGGATTATCTGGGAAGATTGGAAGAGGTCTTGAGAAGTTGCAGCATCTAACGGTATTGTCCCTTTCTCATAACAACTTGTCTGGGACTATTAGTCCTTCCCTTACTCTTTCTAATAGTCTTGAAAGGTTGAACCTTAGTCACAATGGTCTTTCTGGTCCTTTACCTACTTCTTTTGTCAACATGAGTTCAATAAGATTTCTTGATCTTTCAGAGAATTCATTCTCAGGACCAATCCCTGATAGTTTGTTTGAGAGTTGCTTTTCCCTTCATCACCTTTCTTTAGCTTGGAATAAGTTTGAAGGACCAATTCCTAGCACACTTTCTAGATGTTCCTCATTGAATAGTCTTAATCTTTCCTATAACCATTTCACTGGTAATGTGGACTTTATTGGGATTTGGTCATTGAACAGGCTTAGGAATTTGGATCTATCTAATAATGCCTTTTTTGGGAACTTACCTAATGGAATTTCATCCATACATAACTTGAAAGAGATCTTATTACAAAACAACCAGTTTTCAGGTCCATTACCTGTTGATATTGGACTTTGCCTGCATTTGAATAGGTTGGATTTTAGTAATAATCAGTTCACTGGAGAACTACCAGATTCACTTGGGGGGCTTAATGCTTTGAGCTATTTAAGGGCATCAAATAATGTTTTCAACAGTGAATTCCCTCAGTGGATTGGTAACATGACTAGTTTGGAATATCTAGAGCTCTCAAACAATCAATTCTATGGATTCATCCCACAATCAATAGGGGAACTGAGATCACTGACTTATCTGAGCATTTCAAATAACAAGCTTGTTGGGAATATTCCTTTGTCATTGGCTTACTGCACAAAGTTATCTGTGATCAGGCTCAGAGGGAATGGTCTCAATGGTACCATACCAGAGGGTTTGTTTGGCCTAGGATTGGAGGAAGTAGATTTTTCTCATAATGATCTTGTAGGTTCAATTCCAGCAGGCTCAAGCAGGCTCTTAGACACTCTCTCAAAGTTGGATCTTTCAGATAACCATCTCCAAGGGAATATCCCTGCAGAAATGGGCCTTCTTTCAAAACTGAGATATTTGAATCTGTCTTGGAATGATCTTCATTCACAGATTTCTCCAGAGTTTGGTTTCCTTCAGAATCTAACAGTTTTGGATCTTCGTAACAGTGCCTTGTATGGTTCTGTTCCAGCTGATATATGTGATTCAAGCAATTTGGCTGTCCTTCAACTTGATGGAAATTCATTGAAGGGACCTATTCCAGAAGAGATTGGGAATTGTACATCTCTTTACTTGCTGAGTTTGTCCCACAATAATTTGACTGGTTCAATCCCAAAGTCCATGTCAAAGCTAAACAAGCTCAAAATCCTCAAATTGGAATTCAATGAACTAAGTGGAGAGATACCAATGGAGCTTGGAATGCTTCAAAATCTTCTTGCTGTGAATATATCATATAACAGGCTCACAGGAAGGCTTCCAACTGGTAGCATATTTCAGAACTTGGACAAAAGTTCCTTGGAAGGAAACCTTGGTCTTTGCTCACCCTTGTTGAAGGGTCCATGTAAGATGAATGTCCCCAAGCCTTTAGTTCTTGACCCAAATGCCTATAACAACCAAATAGGTCCTCAAAGGCAAAGAAATGAATCATCTATATCTAGCCCAGATCATCACCACAAGTTCCTTAGTGTTTCAGCTCTTGTAGCAATTTCTGCATCCTTTGTCATCATATTAGGAGTGATTGCTGTTAGCCTACTCAATGTTTCTGTGAGGAGAAGGCTATCATTTGTGGACAATGCTTTGGAAAGCATGTGTTCAAGCTCTTCTAGATCAGGAGCTCCAGCCACAGGAAAGCTTATTCTGTTTGATTCCCAATCCTCACCTGATTGGATCAGCAGTCCAGAATCCTTGCTCAACAAGGCATCTGAGATTGGAGAAGGAGTCTTTGGAACAGTTTACAAGGTTCCATTGGGATCACAAGGTAGAATGGTAGCAATCAAGAAGCTTATCACCTCAAACATACTCCAATATCCAGAGGACTTTGATAGGGAAGTTAGAATCCTAGGCAAAGCAAGGCACCCAAATCTAATAGCATTGAAAGGATACTATTGGACTCCTCAATTACAGCTATTAGTAGCTGAATATGCACCAAATGGTAACCTTCAATCCAAGCTACATGAGAGGCTTCCTTCAAGTCCACCACTTTCATGGGCTATTAGATTCAAAATTTTGCTTGGAACAGCAAAGGGACTTGCCCATTTGCATCATGCATTCCGTCCACCAATTATTCACTACAACATAAAGCCAAGCAACATCTTACTTGATGAAAACTACAACCCCAAGATCTCAGATTTTGGGTTAGCTAGGCTTCTAACAAAGCTGGACAGGCATGTGATGAGCAATAGGTTTCAGAGTGCATTAGGATATGTGGCACCAGAATTAGCATGCCAGAGCTTAAGGGTCAATGAGAAATGTGATGTATATGGCTTTGGGGTTATGATCCTTGAGCTAGTGACAGGTAGGAGGCCAGTGGAGTATGGAGAAGACAATGTGCTGATACTGAATGATCATGTAAGAGTGCTGCTTGAGCATGGAAATGTGTTGGATTGTGTGGATCCAAGCATGAGTGAGTACCCAGAAGATGAGGTATTGCCAGTTCTGAAGCTTGCAATGGTTTGCACCTCTCAAATACCTTCTAGCAGACCTACTATGGCTGAAGTGGTGCAAATACTTCAAGTCATCAAAACCCCAGTTCCTCAAAGAATGGAAGTGTTTTGA 3024 0.4028 MTSFQPHWSFLTLLISVSYLLNCLGNNDMPVLLNDDVLGLIVFKSDLHDPSSYLASWNEDDVSPCSWQFVQCNPQSGRVSEVSLDGLGLSGKIGRGLEKLQHLTVLSLSHNNLSGTISPSLTLSNSLERLNLSHNGLSGPLPTSFVNMSSIRFLDLSENSFSGPIPDSLFESCFSLHHLSLAWNKFEGPIPSTLSRCSSLNSLNLSYNHFTGNVDFIGIWSLNRLRNLDLSNNAFFGNLPNGISSIHNLKEILLQNNQFSGPLPVDIGLCLHLNRLDFSNNQFTGELPDSLGGLNALSYLRASNNVFNSEFPQWIGNMTSLEYLELSNNQFYGFIPQSIGELRSLTYLSISNNKLVGNIPLSLAYCTKLSVIRLRGNGLNGTIPEGLFGLGLEEVDFSHNDLVGSIPAGSSRLLDTLSKLDLSDNHLQGNIPAEMGLLSKLRYLNLSWNDLHSQISPEFGFLQNLTVLDLRNSALYGSVPADICDSSNLAVLQLDGNSLKGPIPEEIGNCTSLYLLSLSHNNLTGSIPKSMSKLNKLKILKLEFNELSGEIPMELGMLQNLLAVNISYNRLTGRLPTGSIFQNLDKSSLEGNLGLCSPLLKGPCKMNVPKPLVLDPNAYNNQIGPQRQRNESSISSPDHHHKFLSVSALVAISASFVIILGVIAVSLLNVSVRRRLSFVDNALESMCSSSSRSGAPATGKLILFDSQSSPDWISSPESLLNKASEIGEGVFGTVYKVPLGSQGRMVAIKKLITSNILQYPEDFDREVRILGKARHPNLIALKGYYWTPQLQLLVAEYAPNGNLQSKLHERLPSSPPLSWAIRFKILLGTAKGLAHLHHAFRPPIIHYNIKPSNILLDENYNPKISDFGLARLLTKLDRHVMSNRFQSALGYVAPELACQSLRVNEKCDVYGFGVMILELVTGRRPVEYGEDNVLILNDHVRVLLEHGNVLDCVDPSMSEYPEDEVLPVLKLAMVCTSQIPSSRPTMAEVVQILQVIKTPVPQRMEVF. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00286 1007 Gene3D Phosphorylase Kinase; domain 1 720 801 - -
Seca1g00286 1007 CDD STKc_IRAK 726 994 - -
Seca1g00286 1007 FunFam Inactive leucine-rich repeat receptor-like protein kinase 313 607 - -
Seca1g00286 1007 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 194 288 - -
Seca1g00286 1007 ProSiteProfiles Leucine-rich repeat profile. 102 124 IPR001611 GO:0005515
Seca1g00286 1007 Pfam Leucine Rich Repeat 440 462 IPR001611 GO:0005515
Seca1g00286 1007 Gene3D Ribonuclease Inhibitor 340 610 IPR032675 -
Seca1g00286 1007 ProSitePatterns Protein kinases ATP-binding region signature. 726 750 IPR017441 GO:0005524
Seca1g00286 1007 Gene3D Transferase(Phosphotransferase) domain 1 802 1004 - -
Seca1g00286 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 798 1002 - -
Seca1g00286 1007 ProSiteProfiles Protein kinase domain profile. 720 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca1g00286 1007 SUPERFAMILY L domain-like 51 387 - -
Seca1g00286 1007 SUPERFAMILY L domain-like 311 589 - -
Seca1g00286 1007 SMART LRR_typ_2 462 486 IPR003591 -
Seca1g00286 1007 SMART LRR_typ_2 366 390 IPR003591 -
Seca1g00286 1007 SMART LRR_typ_2 222 246 IPR003591 -
Seca1g00286 1007 SMART LRR_typ_2 148 172 IPR003591 -
Seca1g00286 1007 SMART LRR_typ_2 318 342 IPR003591 -
Seca1g00286 1007 SMART LRR_typ_2 438 461 IPR003591 -
Seca1g00286 1007 SMART LRR_typ_2 558 583 IPR003591 -
Seca1g00286 1007 SMART LRR_typ_2 100 125 IPR003591 -
Seca1g00286 1007 SUPERFAMILY Protein kinase-like (PK-like) 723 1001 IPR011009 -
Seca1g00286 1007 Gene3D Ribonuclease Inhibitor 147 217 IPR032675 -
Seca1g00286 1007 Gene3D Ribonuclease Inhibitor 37 146 IPR032675 -
Seca1g00286 1007 Gene3D Ribonuclease Inhibitor 271 339 IPR032675 -
Seca1g00286 1007 Gene3D Ribonuclease Inhibitor 218 270 IPR032675 -
Seca1g00286 1007 Pfam Leucine rich repeat N-terminal domain 34 73 IPR013210 -
Seca1g00286 1007 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 316 441 IPR046959 -
Seca1g00286 1007 Pfam Leucine rich repeat 312 355 IPR001611 GO:0005515
Seca1g00286 1007 Pfam Leucine rich repeat 487 547 IPR001611 GO:0005515
Seca1g00286 1007 Pfam Leucine rich repeat 102 160 IPR001611 GO:0005515
Seca1g00286 1007 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 193 - -
Seca1g00286 1007 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 714 797 - -
Seca1g00286 1007 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00286 Seca-Chr1 3167839 3171950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00286 11 1004 Receptor kinase-like Gene Family AT3G28040 63.781 0.0 1246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Seca1g00286 Pkinase 6.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00286 - - gmx:100813764 1744.55