Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00279 ATGGATTTTTCTTCTTTGACCTCTCACTTGAGAAACTCGGCGAACTCGTTCCTCTCTCAATACGAACCCCTCGCTCTGCTTCTCGCTCCTCTCCTTTCTCTCCTTCTCGCCCACGCTCTTCGCTCCTTCTTCCACCACCTCCATCACAACGGACTCAAACCCACTCTCATAGGGTTCTTCATGAACTCTATCAAATTGATCCCTGGTGTCAAGAGTTACATAGATGCTGAAAAACGGAAGGTTGTGGATAAGTTGCAGTCTGATAGTAAATCTAAGAGAGAAGGTTGGAAAACAGAGTTGCCAAGCACAGGATTAGGGACATCTGTCCTTGTGAAGATGAGAGAGGAGAAAAGAAATGATGCAATTTGGCAAGGCAAATGCTCTGGTACAGTCTACATTGGAGGAAGTGAATCTGATGGGCATTTTTCTCTGATAAACGAGGCATGTTCAATGTTTGCACATACCAATCCCTTGCATTTGGATGTATTCCAGAGTGTTGTACGCTTTGAGGCAGAAGTGGTTGCAATGACAGCGGCACTTCTTGGAAGTAAGGAAAAGACTTCTGGAGGACAAATATGTGGCAACATGACATCTGGAGGGACTGAAAGTATATTATTAGCTGTTAAATCATCTCGTGACTACATGAAATCTAAGAAAGGAATTACAAGACCTGAAATGATAATTCCTGTGTCTGCACACTCAGCATATGACAAGGCTGCACAGTATTTTAATATCAAACTTTGGCGTGTTCCAGTTAACAAAAATTTTCAAGCAGATGTGAAAGCAATTAGGCGTCATATTAACAAAAATACCATTTTGATTGTTGGATCTGCTCCTGGGTTTCCTCATGGAATAATTGACCCCATTGAGGAACTTGGTCACCTAGCATCAAGCTTTGGTATTTGTTTCCATGTGGACCTTTGCCTTGGTGGCTTTGTATTACCTTTTGCTCGTGAGCTTGGGTACCACATTCCACCTTTTGATTTTTCTGTTAAAGGGGTTTCTTCAATATCTGTGGATGTGCATAAGTATGGTTTAGCTCCCAAAGGAACAAGCATAGTTCTATACAGGAACCATGAAATCAGAAAGGTAAGCCAGTGGTTTGCTCAAAAAGCATTGTGCAATGACTGA 1131 0.4209 MDFSSLTSHLRNSANSFLSQYEPLALLLAPLLSLLLAHALRSFFHHLHHNGLKPTLIGFFMNSIKLIPGVKSYIDAEKRKVVDKLQSDSKSKREGWKTELPSTGLGTSVLVKMREEKRNDAIWQGKCSGTVYIGGSESDGHFSLINEACSMFAHTNPLHLDVFQSVVRFEAEVVAMTAALLGSKEKTSGGQICGNMTSGGTESILLAVKSSRDYMKSKKGITRPEMIIPVSAHSAYDKAAQYFNIKLWRVPVNKNFQADVKAIRRHINKNTILIVGSAPGFPHGIIDPIEELGHLASSFGICFHVDLCLGGFVLPFARELGYHIPPFDFSVKGVSSISVDVHKYGLAPKGTSIVLYRNHEIRKVSQWFAQKALCND. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00279 376 Gene3D - 139 375 IPR015421 GO:0003824
Seca1g00279 376 SUPERFAMILY PLP-dependent transferases 73 363 IPR015424 -
Seca1g00279 376 PANTHER - 37 366 - -
Seca1g00279 376 FunFam sphingosine-1-phosphate lyase 1 138 374 - -
Seca1g00279 376 Pfam Pyridoxal-dependent decarboxylase conserved domain 150 361 IPR002129 GO:0016830|GO:0019752|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00279 Seca-Chr1 3098923 3103072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00279 154 360 Calmodulin-binding Proteins AT3G17760 25.561 3.79e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00279 K01634 - gmx:100794395 640.188