Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00278 ATGTATTTTCTTTCTGGCTTGTGGACTCTGCAGCATCAATTTGTTGCCGTTACTGAATGGTCCGGTGGGTTGTATGTGTCTCCAACCATAGCTGGAAGCAGGCCTGGAAGCCTAATTGCTGGTGCATGGGCAGCAATGATGTCCCTAGGCAAAGAAGGTTACTTGGAAAATACAAAAGCAATTATGGAAGGATCAAAAAGAATGCAGAAAGGCATAGAGGAGATTGCTGAGTTGTTTATCGTTGGAAGACCCGATATGACTATCGTGGCTTTTGGATCTGATGTTCTGGATATATTTGAAGTCAATGATATTATGTCATCCAAAGGGTGGCATTTGAATGCATTGCAGAGACCCAACAGCATCCATATCTGTGTGACACTACAGCATGTACCAGTTGTTGAAGACTTCCTAAGGGATTTAAAGGAATCTGTGAAAACTGTGAAAGAAAATCCCGGTCCAATAAGTGGAGGCCTGGCACCTATATATGGCGCCGCAGGGAAGATGCCAGATAGAGGCATGGTCCAGGAATTGCTGGTAGATTTTATGGACGGTACCTGCTAG 561 0.4439 MYFLSGLWTLQHQFVAVTEWSGGLYVSPTIAGSRPGSLIAGAWAAMMSLGKEGYLENTKAIMEGSKRMQKGIEEIAELFIVGRPDMTIVAFGSDVLDIFEVNDIMSSKGWHLNALQRPNSIHICVTLQHVPVVEDFLRDLKESVKTVKENPGPISGGLAPIYGAAGKMPDRGMVQELLVDFMDGTC. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00278 186 Gene3D Aspartate Aminotransferase, domain 1 51 149 IPR015422 GO:0003824
Seca1g00278 186 PANTHER - 10 186 - -
Seca1g00278 186 Gene3D - 11 50 IPR015421 GO:0003824
Seca1g00278 186 FunFam Sphingosine-1-phosphate lyase 1 39 149 - -
Seca1g00278 186 Gene3D - 150 183 - -
Seca1g00278 186 SUPERFAMILY PLP-dependent transferases 10 149 IPR015424 -
Seca1g00278 186 FunFam Sphingosine-1-phosphate lyase 1 146 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00278 Seca-Chr1 3095804 3097571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00278 29 184 Calmodulin-binding Proteins AT1G65960 27.219 1.46e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00278 K01634 - gmx:100794743 340.502