Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00256 ATGAGATGCATCTTTTCTGGAATACTGATTATGAATTTTATGGCTGCAATAATCCAGTGTGCTCTTGCTGCCATTGTGATCTCTGCTGTGATAGGTCTGGTGGATTATGAAGAGGCCATTTTTTTGTGGCGAGTAGATAAGAAAGATTTTCTTCTTTGGACCATTACTAGCACTACAACATTGTTCCTTGGTATTGAGATTGGTGTACTTGTTGGGGTTGGGGTGTCACTTGCTTTTGTCATTCATGAGTCAGCAAATCCACACGTTGCTGTTTTGGGTCGCTTGCCGGGGACAACTGTTTATAGAAATGTTAAACAATATCCTGAAGCATATACATACAATGGCATTGTAATTGTTCGTATTGATGCTCCTATTTATTTTGCAAACACAAGTTTCATAAAGGACAGGTTGCGGGAATATGAAGTAGATGTTGATAGTTCTACAAGGCGTGGGCCTGAGGTTGAGAGAATTCATTTTGTGATCCTAGAGATGGCCCGTAAGTTCTGCTTACCTTGTGTACGAAGAAGCATCATCTTTTGTTCTAAGCATACGGTTATGATGACTGCAGCCGTGACCTACATAGACTCTAGTGCTGTTCAGGCTTTGAAGGATCTGTATCAGGAGTACAAATTACGGGACATTCAGATTGCAATATCCAATCCAAACCCAGAAGTTTTGCTTACCTTGTCTAGATCCGGTCTGGTGGAGTTGATAGGCAAAGAATGGTACTTTGTGAGAGTACATGATGCTGTTCAAGTTTGCCTGCAGCATGTTCAAAGCTTGAAAGCAAAATCTTACAGTTCACAAACGCCACACTCTTTATCAGAAGACAAATCAAGGTTCTTTGCTCACTTATTTAAACAGAGAGGAGAGAACCTTTCAGTTACGGACGTGGAGTCTGGTAATGGCAGGCCTCCACCCTCCGAGGACAGAGATTCCCAATTGGAGCCATTGTTGTCAAAAGAACGTTGA 972 0.4177 MRCIFSGILIMNFMAAIIQCALAAIVISAVIGLVDYEEAIFLWRVDKKDFLLWTITSTTTLFLGIEIGVLVGVGVSLAFVIHESANPHVAVLGRLPGTTVYRNVKQYPEAYTYNGIVIVRIDAPIYFANTSFIKDRLREYEVDVDSSTRRGPEVERIHFVILEMARKFCLPCVRRSIIFCSKHTVMMTAAVTYIDSSAVQALKDLYQEYKLRDIQIAISNPNPEVLLTLSRSGLVELIGKEWYFVRVHDAVQVCLQHVQSLKAKSYSSQTPHSLSEDKSRFFAHLFKQRGENLSVTDVESGNGRPPPSEDRDSQLEPLLSKER. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00256 323 Pfam STAS domain 182 250 IPR002645 -
Seca1g00256 323 Pfam STAS domain 107 165 IPR002645 -
Seca1g00256 323 ProSiteProfiles STAS domain profile. 106 254 IPR002645 -
Seca1g00256 323 SUPERFAMILY SpoIIaa-like 108 254 IPR036513 -
Seca1g00256 323 PANTHER SULFATE TRANSPORTER 10 263 IPR001902 GO:0016020|GO:0055085
Seca1g00256 323 Pfam Sulfate permease family 9 56 IPR011547 GO:0016020
Seca1g00256 323 MobiDBLite consensus disorder prediction 304 323 - -
Seca1g00256 323 Gene3D STAS domain 86 258 IPR036513 -
Seca1g00256 323 MobiDBLite consensus disorder prediction 293 323 - -
Seca1g00256 323 CDD STAS_SulP_like_sulfate_transporter 107 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00256 Seca-Chr1 2946269 2950163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00256 17 260 Inorganic Solute Cotransporters AT5G13550 75.410 1.48e-124 370
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00256 K18059 - gmx:100794754 456.447