Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00250 ATGGTGGGCAACGATGATGCTCGCCACCTCTCCGCCTCCCGGAAAATGTTCTGGCGGTCAGCTTCATGGTCCTCTGCTCGCTCCGCCGCCGCTGGAAATCCTTCCGGGGAGTCGGAGAAGGATTTTGCCGATCCCAATTCCGCTGCGGAGAACACGAATTGGAGGTTCCCTCCACCGCCATTGACACCACGATCGCAGCAAAATTGCAAGGCACGGTCTTGCTTGCCGCCGTTGCAGCCGCTTTCCATCGCTCGCCGGAGCTTGGATGAGTGGCCCAAGGCGAGCTCTGATGACATAGGGGAGTGGCCGCAGCCCCCTACCACCCCTAGTGGAAGAGGTAACAACAACAATAACAGTAGTAATAGCAATAACAATGGTGAAAGATTGAAACTAGATTTGTCTTCAATTCAGCAGAACAACCCTGAACACAGGAATAACGGTGGGCTTGTGAAGAGGGATAAGATTGCTTTTTTTGATAAAGAATGTTCAAAAGTTGCTGATCATGTGTATCTTGGTGGTGATGCTGTTGCTAGGGATAGAGATATTTTGAAAAAGAATGGGATCACCCATGTTTTGAACTGTGTGGGTTTTGTGTGTCCTGAGTATTTCAAAGCTGATTTTGTGTATAGGACTTTGTGGTTGCAGGATAGTCCTTCGGAGGATATAACTAGTATTCTGTATGATGTGTTTGATTACTTTGAGGATGTTAGGGAACAGAATGGGAGGGTGTTTGTCCACTGTTGTCAAGGGGTGTCCAGGTCCACTTCTCTGGTGATTGCTTACCTCATGTGGAGGGAAGGGCAGAGTTTTGAGGATGCCTTTCAGTTTGTGAAGGCGGCAAGAGGTATTGCTGATCCAAACATGGGTTTTGCTTGTCAGTTGTTACAGTGCCAGAAAAGGGTCCATGCATTCCCTCTTAGCCCAAGCTCTTTGCTGAGAATGTATAGAATTGCTCCCCACTCACCATATGATCCTTTGCATCTTGTCCCTAAAATGTTGACGGATCCATCTCCATCTGCATTGGACTCCAGGGGTGCATTTATAGTACACATTCCTTCTGCAATATATGTTTGGATTGGTAAGAATTGTGAAGCCATCATGGAAAGGGATGCCAGAGGGGCTGTAGGTCAGATTGTCCGCTATGAGAGAGTGCAAGGGCCTATTATAATGATTAAGGAAGGTGAGGAACTGGCTTCCTTCTGGGATGCTTTTTCAAAATTTTTGCCTTTGATGGACACATCTGGTAATAAAGTAGAAAGTAGCAGATCAAGTATTAAAATTTTGCCTGGTGAGAGGAAAGTGGACTCATATGATGTTGATTTTGAAGTTTTCCAAAAAGCAATCACTGGAGGTTTTGTGCCTCCATTTGCGTCATCAGAGGATGAACATGAAACCCATCTTCCTGCAAGAGAGAGTAATTGGAGCGTTTTAAGGCGAAATAAAGTTACCTCTGCTAACATGAAAGAGTTTGTCTCAGCCCCTAAGTTATCCTTTCCACGGGTTTATTCAGATTCCATGTTGTGTATTCATACATCAGCAAATTCATCTCCATCTTCGTCAGTGTCATCATCACCATCTTTATCATCTTCCTCTTCACCCTCTTATGTCTCTCCAGATTCCATTTCTTCTGATTCTAGCACTCATTCAAAGTTTTTGTCAGAATTGTCACCAGATTCTTCCTCTCTAGTTTTGAGTTCTATTGCAGTATCTCCACCTTTGTCTAACTTTACTAATTTGTCTCTCTCATCAAATTCTTCTCAACCAGTGTCTAACAGTACAGATGTCCACGGTGTCAAGTTACCACATCCATGTTCTCAGTCAGCCTCTTTACCATTGAAAAAACCACCAACTTCCCTTGCTGAACGCAGAGGTAGTTTGTCAAAGTCTTTGAAGTTGCCACTAATGAATGAAAAGACACAAGTAATAAATAAACCATCAACTTTTCATGGTAGTCGAGAATATGGTGCTGTTGTTAATGGCAACATTAGCTATTTGCAACAATCAGATAGTATAGATTTTGTTTTTGAGTCCAACAACCGTGTCAAGGATGGAGGTGCGAATTCAATTCAACAGTGTGAACAAGCATTATGTCCAGGCCGTGTTGAGTCTTCAACAGATAATGCCTCAAGAGAAGGCTTAAAGTCCACATCATCAAAGGGAACTAATGAGAGTGGCTTATTGCAATATAGTACGACACAAACTTCAGTGTTTCACTGGCCCAGTTTAGAAAAGGCTGAGACATTTGGTACAAGTCATTTGGATTCTAAAGCTGCTTTTGTCATGTTCTCTCCAAGTATGAATGTACACACAGGAAACGTTTTATATTTTTGGGTAGGGAGGTCTTTCAATTATGATGCTTCACAGGTTCAGTTAGATAGTGATAGACAGTCTGATTTTCTTGGAGCAGTTGACTGGAATCAAATTGGTTATGATCTCCTTGCTCGGTTTAGTTTGCCAAAGGATACAATCATCAAGATTGTTAAAGAGAATGAAGAACCACAAGAATTCATTGCTTTGCTGAGTTCATTGTAG 2532 0.4293 MVGNDDARHLSASRKMFWRSASWSSARSAAAGNPSGESEKDFADPNSAAENTNWRFPPPPLTPRSQQNCKARSCLPPLQPLSIARRSLDEWPKASSDDIGEWPQPPTTPSGRGNNNNNSSNSNNNGERLKLDLSSIQQNNPEHRNNGGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKKNGITHVLNCVGFVCPEYFKADFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQNGRVFVHCCQGVSRSTSLVIAYLMWREGQSFEDAFQFVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRIAPHSPYDPLHLVPKMLTDPSPSALDSRGAFIVHIPSAIYVWIGKNCEAIMERDARGAVGQIVRYERVQGPIIMIKEGEELASFWDAFSKFLPLMDTSGNKVESSRSSIKILPGERKVDSYDVDFEVFQKAITGGFVPPFASSEDEHETHLPARESNWSVLRRNKVTSANMKEFVSAPKLSFPRVYSDSMLCIHTSANSSPSSSVSSSPSLSSSSSPSYVSPDSISSDSSTHSKFLSELSPDSSSLVLSSIAVSPPLSNFTNLSLSSNSSQPVSNSTDVHGVKLPHPCSQSASLPLKKPPTSLAERRGSLSKSLKLPLMNEKTQVINKPSTFHGSREYGAVVNGNISYLQQSDSIDFVFESNNRVKDGGANSIQQCEQALCPGRVESSTDNASREGLKSTSSKGTNESGLLQYSTTQTSVFHWPSLEKAETFGTSHLDSKAAFVMFSPSMNVHTGNVLYFWVGRSFNYDASQVQLDSDRQSDFLGAVDWNQIGYDLLARFSLPKDTIIKIVKENEEPQEFIALLSSL. 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00250 843 CDD DSP 162 296 - -
Seca1g00250 843 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 155 302 IPR029021 -
Seca1g00250 843 MobiDBLite consensus disorder prediction 101 127 - -
Seca1g00250 843 MobiDBLite consensus disorder prediction 18 74 - -
Seca1g00250 843 MobiDBLite consensus disorder prediction 580 594 - -
Seca1g00250 843 Gene3D Severin 312 408 IPR029006 -
Seca1g00250 843 Pfam Dual specificity phosphatase, catalytic domain 169 299 IPR000340 GO:0008138|GO:0016311
Seca1g00250 843 MobiDBLite consensus disorder prediction 18 32 - -
Seca1g00250 843 ProSitePatterns Tyrosine specific protein phosphatases active site. 245 255 IPR016130 GO:0016311|GO:0016791
Seca1g00250 843 MobiDBLite consensus disorder prediction 700 725 - -
Seca1g00250 843 SUPERFAMILY Actin depolymerizing proteins 308 410 - -
Seca1g00250 843 ProSiteProfiles Dual specificity protein phosphatase domain profile. 161 303 IPR020422 GO:0006470|GO:0008138
Seca1g00250 843 PANTHER MKPA PROTEIN 12 840 - -
Seca1g00250 843 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 220 281 IPR000387 GO:0016311|GO:0016791
Seca1g00250 843 MobiDBLite consensus disorder prediction 89 127 - -
Seca1g00250 843 MobiDBLite consensus disorder prediction 513 541 - -
Seca1g00250 843 Gene3D Protein tyrosine phosphatase superfamily 135 303 IPR029021 -
Seca1g00250 843 SMART dsp_5 161 300 IPR020422 GO:0006470|GO:0008138
Seca1g00250 843 MobiDBLite consensus disorder prediction 580 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00250 Seca-Chr1 2880891 2885354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00250 2 197 Protein tyrosine phosphatase (PTP) family AT3G55270 60.204 2.61e-65 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00250 - - vum:124838930 1243.41