Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00248 ATGGCTCCTTCAAAAGTGGACAATGCTAAAAAAGCTGATCCCAAGGCTCAGGCCTTGAAGACAGCCAAGGCTGTTAAATCAGGTGGCCAAGTGCTTAAGAAGAAAGCTAAAAAGATCAGGACATCAGTCACATTTCACCGGCCAAAGACATTGACGAAGGAAAGGAACCCTAAGTATCCCCGCATTAGTGCAACACCAAGAAACAAGTTGGACCAGTATCAGATCCTTAAATTTCCTCTAACTACTGAGTCTGCAATGAAGAAGATTGAGGATAACAACACACTGGTTTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATTAAAGATGCTGTGAAGAAAATGTATGACATTCAGGCCAAGAAAGTGAATACTTTGATCAGGCCAGATGGAACAAAGAAAGCCTATGTTAGGTTGACTCCAGATTATGATGCCTTGGATGTAGCCAACAAAATTGGTATCATCTAA 468 0.4124 MAPSKVDNAKKADPKAQALKTAKAVKSGGQVLKKKAKKIRTSVTFHRPKTLTKERNPKYPRISATPRNKLDQYQILKFPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII. 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00248 155 Pfam Ribosomal protein L23, N-terminal domain 15 64 IPR005633 -
Seca1g00248 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 73 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Seca1g00248 155 MobiDBLite consensus disorder prediction 1 38 - -
Seca1g00248 155 ProSitePatterns Ribosomal protein L23 signature. 133 148 IPR001014 GO:0019843
Seca1g00248 155 FunFam 60S ribosomal protein L23a 34 155 - -
Seca1g00248 155 Pfam Ribosomal protein L23 75 137 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca1g00248 155 Gene3D - 36 155 IPR012677 -
Seca1g00248 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 7 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Seca1g00248 155 NCBIfam 50S ribosomal protein L23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Seca1g00248 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00248 Seca-Chr1 2867441 2869062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00248 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 88.387 1.17e-69 205