Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00244 ATGATGATATCGAGGGGATTGTTCGGGTGGTCCCCGCCGCACGTGCAGCCGCTGACGCCGGTTTCGGAGGTGTCAGAGCCGCCGGAGTCTCCGTCGCCCTACCTGGACCTCGGCGCCGAGACCTCCGCGTCGCAGCAGGTGGAAGTCGAGGAGGAGATGGAGGAACCGGAGGAGATCGAGCCGCCGCCAGCAGCGGTTCCTTTCTCGCGGCTCTTTAAATGCGCCGACCGGTTCGATTGGTTCCTCATGGCCGTCGGTTCCATCGCCGCCGCGGCTCACGGTACCGCGCTCGTTGTTTACTTGCACTACTTCGCTAAGATCATCCATGTTCTGCGGATGGATCCGCATAAGCAGCAGGAGCAGTTTGACAGGTTCACAGAGTTACTTCTGCAGCTTGCTTTAACCATTGTTTATATTGCTGTGGGAGTTTTTGCTGCTGGTTGGATTGAGGTTTCATGTTGGATCTTGACTGGAGAACGACAGACTGCTGTCATCAGGTCCAAATATGTTCAAGTATTACTAAATCAGGATATGAGTTTTTTTGATACTTATGGGAATAACGGAGACATTGTGAGTCAAGTATTGAGTGACGTGCTGCTTATCCAGTCTGCCCTTAGTGAAAAAGTTGGAAATTATATTCATAATATGGCTACATTCTTCAGTGGTCTTGTCATTGGCCTTATCAATTGTTGGCAGATAGCTTTGATAACATTAGCCACGGGTCCTTTTATTGTTGCTGCTGGAGGAATATCAAATATATTCCTCCATAGGCTTGCGGAGAATATCCAAGATGCATATGCTGAAGCAGCTAGCATTGCTGAACAGGCAGTTTCCTATATCAGGACATTGTATGCATTTACAAATGAAACATTGGCCAAGTACTCATATGCAACATCACTCCAAGCTACTCTTAGATATGGTATATTAATAAGTCTTGTTCAAGGGCTTGGTCTTGGATTTACGTATGGGCTTGCAATATGTTCTTGTGCATTACAACTCTGGGTTGGAAGATTCTTGGTTATTCATGAAAAAGCGCATGGTGGTGAAATTATAACAGCCCTGTTCGCTGTAATTCTAAGTGGCCTGGGATTGAATCAAGCAGCAACGAATTTCTATTCATTTGATCAAGGGAGAATAGCTGCTTATAGGCTATTTGAGATGATAAGCCGGTCATCCTCATCTGTTAATCACGATGGCACTACACCTGATTCTGTGCAAGGAAATATAGAGTTTCGAAATGTTTACTTCAGCTATCTGTCTCGTCCTGAAATCCCTATCTTGAGTGGATTTTATCTCACTGTACCTTCTAAGAAAGCTGTAGCACTTGTTGGCAGAAATGGCTCTGGAAAAAGTAGTATTATTCCACTCATGGAGCGTTTTTATGATCCTACATTAGGTGAAGTTCTTCTAGATGGAGAAAACATCAAAAATTTGAAACTGGAATGGCTGAGGAGCCAAATAGGACTAGTCACCCAGGAGCCTGCTTTGCTCAGTTTGAGTATAAGAGACAACATTGCTTATGGGAGGGATGTCACCATGGATCAAATTGAAGAGGCTGCTAAAATAGCTCATGCACATACGTTTATCAGCTCATTAGAGAAAGGTTATGACACACAGGTTGGCAGGGCTGGTCTAGATTTGACTGAAGAGCAGAAAATAAAACTTTCTATTGCAAGAGCTGTGCTTCTAAATCCACCAATTCTTCTACTTGATGAGGTTACTGGTGGACTTGATTTTGAGGCTGAGAGGGCTGTTCAGGAGTCTCTTGATCTGCTTATGTTGGGACGCTCAACAATAATAATTGCTCGAAGGCTTAGTCTCATAAGGAACGCTGATTATATAGCTGTTATGGAGGAAGGTCAACTTGTTGAAATGGGTACCCATGATGAATTGTTGACCCTGGATGGCTTATATGCAGAGCTTCTTCGATGTGAAGAGGCAGCAAAACTTCCCAAGAGGATGCCTGTTCGAAACTACAAGCAGACTGCAGCATTCCAAATAGAGAAGGATTCTTCAGCAAGTCATAGCTTCAATGAACCATCATCCCCTAAAATGATGAAGTCACCCTCTCTTCAAAGAATTTCTAATGTATCAAGACCTCGAGATGGCATCTTTAACTTGCAAGAATCACCTAAAGTCAGGAGTCCTCCACCTGAAAAGATGCTGGAAAATGGTCAGGCTTTGGCACCTGATAAGGAACCATCAATAAGAAGGCAGGATAGTTTTGAAATGAGACTGCCAGAGTTACCCAAAATTGATGTACAGTCTGTGCATCGACAAAAATCAAATGATTCTGACCCAGAATCCCCTGTTTCACCTCTTCTAACATCTGATCCTAAAAATGAACGCTCACATTCACAGACTTTTAGCAGACCACATAGTCATTCTGATGACGCTTCAGTTACAATGAGAGAAAAAAAGGATGCACGGCATCGAAAACCACCATCACTTCAGAAGCTTGCTGAGCTTAGTTTTGCTGAGTGGCTTTATGCTGTGTTAGGAAGCATAGGTGCTGCTATCTTTGGTTCTTTCAATCCCCTTCTTGCTTATGTTATTGGCCTTGTGGTGACAGCTTACTATAATATTGATAAGCAGCATCACTTAGAACGGGAGGTAGACAGGTGGTGCTTGATCATTGGCTGCATGGGTATTGTAACAGTTATCGCCAACTTTTTGCAGCATTTCTACTTTGGTATTATGGGAGAGAAAATGACAGAAAGAGTTAGGAGAATGATGTTCTCAGCCATGCTACGCAATGAAGTCGGATGGTTTGATGATGAGGAAAACAGTGCTGACAATTTATCCATGCGATTGGCCAATGATGCTACTTTTGTACGAGCTGCATTTAGCAACCGACTTTCCATATTTATACAGGACAGTGCCGCAGTTATTGTTGGTCTTCTCATTGGTGTTTTGCTGCACTGGCGGTTAGCACTTGTGGCTTTTGCAACCCTTCCGATTCTCTGCATTTCTGCATTTGCCCAGAAGTTGTGGCTAGCTGGATTTTCAAGGGGCATACAGGAAATGCACAGAAAGGCATCTTTGGTTCTTGAAGATGCAGTCAGAAACATATACACTGTCGTTGCATTTTGTGCTGGCAATAAGGTAATGGAGCTCTATAGGCTGCAGTTAAAGAAAATATTTAAGCAGAGCTTTCTTCATGGGATGGCAATTGGTTTCGCATTCGGATTTTCACAGTTTCTACTTTTTGCTTGTAATGCCCTTCTACTTTGGTACACTGCGATATGTATAAAAAATGGTTACATGAATCCACCTACTGCGCTCAAGGAGTACATGGTTTTCTCATTTGCTACATTTGCACTTGTGGAGCCTTTTGGGTTGGCTCCTTACATACTTAAACGGAGAAAATCTCTCATATCAGTGTTTGAAATTATAGATCGTGTGCCTAAAATTGATCCTGATGATAGCTCAGCATTGAAGCCACCCAATGTATATGGGAGCATTGAGTTAAAAAATGTTGATTTTTGTTACCCATCTCGACCTGAATTGTTGGTATTGAGCAATTTTAGTCTCAAAGTCAATGGGGGCCAAACAGTTGCTATTGTGGGAGTTTCAGGGTCAGGAAAAAGCACTATAATATCTTTGATTGAGAGATTTTATGATCCAGTTGCGGGGCAAGTTTTACTGGATGGGAGGGATTTAAAGCTTTATAACTTGAGATGGTTGAGGAGCCACCTTGGTCTGGTTCAGCAGGAGCCTATTATCTTCTCAACAACAATAAGGGAAAACATTATATATGCAAGGCATAATGCCAGTGAAGCTGAGATGAAAGAGGCTGCAAGAATAGCAAATGCTCATCATTTCATTAGCAGCTTGCCTCATGGTTATGACACTCACGTAGGGATGAGAGGTGTTGATTTAACCCCAGGACAAAAACAGAGAATTGCAATTGCAAGGGTGGTGCTGAAAAATGCACCTATCTTATTGTTGGATGAAGCAAGTTCATCAATTGAATCTGAGTCAAGCCGAGTAGTACAAGAGGCTCTAGACACACTAATAATGGGAAACAAGACCACTATTTTAATAGCTCATAGAGCTGCAATGATGAGGCATGTGGACAATATTGTAGTGCTTAATGGAGGACGGATAGTGGAGGAGGGCAGTCATGATTCATTGGTGGCAAAGAATGGTCTGTATGTCCGATTGATGCAACCTCATTTTGGTAAAGCTTTGCGTCAGCATCGGCTTGTTTAG 4215 0.4301 MMISRGLFGWSPPHVQPLTPVSEVSEPPESPSPYLDLGAETSASQQVEVEEEMEEPEEIEPPPAAVPFSRLFKCADRFDWFLMAVGSIAAAAHGTALVVYLHYFAKIIHVLRMDPHKQQEQFDRFTELLLQLALTIVYIAVGVFAAGWIEVSCWILTGERQTAVIRSKYVQVLLNQDMSFFDTYGNNGDIVSQVLSDVLLIQSALSEKVGNYIHNMATFFSGLVIGLINCWQIALITLATGPFIVAAGGISNIFLHRLAENIQDAYAEAASIAEQAVSYIRTLYAFTNETLAKYSYATSLQATLRYGILISLVQGLGLGFTYGLAICSCALQLWVGRFLVIHEKAHGGEIITALFAVILSGLGLNQAATNFYSFDQGRIAAYRLFEMISRSSSSVNHDGTTPDSVQGNIEFRNVYFSYLSRPEIPILSGFYLTVPSKKAVALVGRNGSGKSSIIPLMERFYDPTLGEVLLDGENIKNLKLEWLRSQIGLVTQEPALLSLSIRDNIAYGRDVTMDQIEEAAKIAHAHTFISSLEKGYDTQVGRAGLDLTEEQKIKLSIARAVLLNPPILLLDEVTGGLDFEAERAVQESLDLLMLGRSTIIIARRLSLIRNADYIAVMEEGQLVEMGTHDELLTLDGLYAELLRCEEAAKLPKRMPVRNYKQTAAFQIEKDSSASHSFNEPSSPKMMKSPSLQRISNVSRPRDGIFNLQESPKVRSPPPEKMLENGQALAPDKEPSIRRQDSFEMRLPELPKIDVQSVHRQKSNDSDPESPVSPLLTSDPKNERSHSQTFSRPHSHSDDASVTMREKKDARHRKPPSLQKLAELSFAEWLYAVLGSIGAAIFGSFNPLLAYVIGLVVTAYYNIDKQHHLEREVDRWCLIIGCMGIVTVIANFLQHFYFGIMGEKMTERVRRMMFSAMLRNEVGWFDDEENSADNLSMRLANDATFVRAAFSNRLSIFIQDSAAVIVGLLIGVLLHWRLALVAFATLPILCISAFAQKLWLAGFSRGIQEMHRKASLVLEDAVRNIYTVVAFCAGNKVMELYRLQLKKIFKQSFLHGMAIGFAFGFSQFLLFACNALLLWYTAICIKNGYMNPPTALKEYMVFSFATFALVEPFGLAPYILKRRKSLISVFEIIDRVPKIDPDDSSALKPPNVYGSIELKNVDFCYPSRPELLVLSNFSLKVNGGQTVAIVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLRSHLGLVQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGMRGVDLTPGQKQRIAIARVVLKNAPILLLDEASSSIESESSRVVQEALDTLIMGNKTTILIAHRAAMMRHVDNIVVLNGGRIVEEGSHDSLVAKNGLYVRLMQPHFGKALRQHRLV. 1405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00244 1404 MobiDBLite consensus disorder prediction 766 783 - -
Seca1g00244 1404 Pfam ABC transporter 1173 1321 IPR003439 GO:0005524
Seca1g00244 1404 Coils Coil 255 275 - -
Seca1g00244 1404 Gene3D - 399 646 IPR027417 -
Seca1g00244 1404 MobiDBLite consensus disorder prediction 669 815 - -
Seca1g00244 1404 Gene3D ABC transporter type 1, transmembrane domain 801 1143 IPR036640 GO:0005524|GO:0016020
Seca1g00244 1404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 832 1124 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g00244 1404 FunFam ABC transporter B family member 20 1145 1394 - -
Seca1g00244 1404 CDD ABC_6TM_Pgp_ABCB1_D2_like 827 1138 - -
Seca1g00244 1404 PANTHER ABC TRANSPORTER B FAMILY 48 646 IPR039421 -
Seca1g00244 1404 MobiDBLite consensus disorder prediction 733 765 - -
Seca1g00244 1404 FunFam ABC transporter B family member 6 772 1000 - -
Seca1g00244 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1144 1391 IPR027417 -
Seca1g00244 1404 MobiDBLite consensus disorder prediction 784 815 - -
Seca1g00244 1404 SMART AAA_5 436 615 IPR003593 GO:0016887
Seca1g00244 1404 SMART AAA_5 1182 1369 IPR003593 GO:0016887
Seca1g00244 1404 Gene3D ABC transporter type 1, transmembrane domain 70 661 IPR036640 GO:0005524|GO:0016020
Seca1g00244 1404 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 409 644 IPR003439 GO:0005524
Seca1g00244 1404 SUPERFAMILY ABC transporter transmembrane region 69 384 IPR036640 GO:0005524|GO:0016020
Seca1g00244 1404 Pfam ABC transporter transmembrane region 86 359 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g00244 1404 Pfam ABC transporter transmembrane region 837 1101 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g00244 1404 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 84 376 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca1g00244 1404 Pfam ABC transporter 430 574 IPR003439 GO:0005524
Seca1g00244 1404 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 643 IPR027417 -
Seca1g00244 1404 Gene3D - 1145 1399 IPR027417 -
Seca1g00244 1404 FunFam ABC transporter B family member 6 1002 1152 - -
Seca1g00244 1404 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1155 1392 IPR003439 GO:0005524
Seca1g00244 1404 MobiDBLite consensus disorder prediction 18 61 - -
Seca1g00244 1404 FunFam ABC transporter B family member 20 399 646 - -
Seca1g00244 1404 FunFam ABC transporter B family member 20 70 411 - -
Seca1g00244 1404 CDD ABC_6TM_Pgp_ABCB1_D1_like 83 384 - -
Seca1g00244 1404 SUPERFAMILY ABC transporter transmembrane region 819 1140 IPR036640 GO:0005524|GO:0016020
Seca1g00244 1404 MobiDBLite consensus disorder prediction 669 703 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00244 Seca-Chr1 2846809 2857615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00244 53 698 Calmodulin-binding Proteins AT2G36910 43.272 6.32e-169 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00244 K05658 - gmx:100789116 2528.82