Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00243 ATGGCAATCTATAGAATTGCAATTGGGTCTCCTGGAGAGGCTGGCCAACCTGATGCAATTAGAGCAGCATTTGCAGAATTCTTCTCCATGTTGATTTTTGTTTTTGCTGGCCAAGGGTCTGGCATGGCTTACAGCAAAATTACCAACAATGGACCTGCAACACCTGCTGGTCTCATAGTTGCATCATTATCTCATGCATTTGGACTTTTTGTGGCTGTTTCTGTTGGGGCAAACGTTTCTGGTGGTCATGTGAACCCTGCAGTCACATTTGGTGCCTTCATAGGAGGAAACATAACCCTGTTGAGAAGCATTTTATATTGGATTGCCCAGTTGCTTGGTTCAGTTGTTGCTTGCATTCTTCTTAAGTCTGCTACTGGTGGAATGGAAACATCAGCTTTTGCTCTATCCTCTGGTGTCTCTGTCTGGAATGCACTAGTTTTTGAAATTGTGATGACTTTTGGCTTGGTATATACAGTTTATGCCACAGCAGTAGACCCAAAGAAAGGGAATGTGGGCATTGTTGCCCCAATTGCAATTGGTTTTATTGTGGGTGCTAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCCATGAACCCAGCTGTGTCCTTTGGCCCTGCTGTGGTTAGCTGGTCATGGACCCATCACTGGGTCTATTGGGTTGGCCCATTCATTGGTGCAGCAATTGCTGCCATTATCTATGATAACATCTTCATTGGTGATGATGGTCATGAACCTCTCTCAAGCAGTGATTTCTAG 759 0.444 MAIYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKITNNGPATPAGLIVASLSHAFGLFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFALSSGVSVWNALVFEIVMTFGLVYTVYATAVDPKKGNVGIVAPIAIGFIVGANILVGGAFDGASMNPAVSFGPAVVSWSWTHHWVYWVGPFIGAAIAAIIYDNIFIGDDGHEPLSSSDF. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00243 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Seca1g00243 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00243 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00243 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00243 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00243 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00243 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00243 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Seca1g00243 252 SUPERFAMILY Aquaporin-like 17 240 IPR023271 -
Seca1g00243 252 PANTHER AQUAPORIN-8 6 246 IPR034294 -
Seca1g00243 252 FunFam Probable aquaporin TIP1-1 4 251 - -
Seca1g00243 252 Pfam Major intrinsic protein 16 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca1g00243 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00243 Seca-Chr1 2843510 2845242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00243 1 252 Major Intrinsic Protein MIP AT4G01470 85.317 7.44e-156 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00243 K09873 - gmx:100788583 465.692