Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00240 ATGAAGAGAGAAAGAGATCATCATCAGGTTGATAGCATAACCATGGCAAATTATTTGATGTTTCTTTCTCGTGGTGATCAATTTGAAGGTAGCAACTCCTATAACAGCCGTGTGTTTGAATGCAAGACATGTAACAGACAATTCCCTTCATTTCAAGCACTTGGTGGACACAGGGCTAGTCACAAGAAGCCAAGGTTGGTGGCAGAGAATGGAGACATGATGATGGATGGTCTTCTTGGTTCACCACCAAAGCCTAAAACCCATGAGTGTTCTGTTTGTGGGTTGGAGTTTGCAATAGGACAAGCCTTGGGTGGTCACATGAGGAGGCACAGAGCTGCAAATTTGAATGGAAACATCACTATGAGTAATAGTAGTGGTGGTAGCAGTCTTGATTCTTCATCACCAAACATGAAAGCTGCTGGTAGCAACAAGAGATCATCATCATCAGTTTTGGCTTTGGATTTGAATTTGACACCTTTTGAGAATGATTTGGAGTTTTTGAAGATTGGAAAGCCAACTGTCTTGGGTGATTATTTGTATTGA 543 0.4144 MKRERDHHQVDSITMANYLMFLSRGDQFEGSNSYNSRVFECKTCNRQFPSFQALGGHRASHKKPRLVAENGDMMMDGLLGSPPKPKTHECSVCGLEFAIGQALGGHMRRHRAANLNGNITMSNSSGGSSLDSSSPNMKAAGSNKRSSSSVLALDLNLTPFENDLEFLKIGKPTVLGDYLY. 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00240 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Seca1g00240 180 MobiDBLite consensus disorder prediction 117 145 - -
Seca1g00240 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Seca1g00240 180 SUPERFAMILY beta-beta-alpha zinc fingers 37 110 IPR036236 -
Seca1g00240 180 PANTHER ZINC FINGER PROTEIN ZAT5 11 162 - -
Seca1g00240 180 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Seca1g00240 180 Pfam C2H2-type zinc finger 88 112 - -
Seca1g00240 180 Pfam C2H2-type zinc finger 38 64 - -
Seca1g00240 180 SMART c2h2final6 88 110 IPR013087 -
Seca1g00240 180 SMART c2h2final6 39 61 IPR013087 -
Seca1g00240 180 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
Seca1g00240 180 Gene3D Classic Zinc Finger 37 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00240 Seca-Chr1 2810592 2811134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00240 1 174 C2H2 Transcription Factor Family AT2G37430 44.505 7.04e-40 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca1g00240 zf-C2H2_6 5.7e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00240 - - gmx:100781134 229.95