Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00233 ATGGCAGCAAATGGGGAGAAACTGGCAATGGGAATTGATCTAGGCACGACCTACTCTTGTGTTGCAGTGTGGCAGCATGATCGGGTAGAGATCATTGCGAACGACCAAGGGAACAGAATAACACCCTCTTATGTTGCTTTCACTGACACCCAAAGGATGATTGGTGATGCTGCTCTCAACCAGGCTGCTACCAACCCCACCAACACCATCTTTGGTAAAACTTCTAACCTCAATTACTCTTTTTTTTGTCAACTACCTCAATTACTCTTATGTCAAAATTTATATATTACCGTTGTGTTTTCCATGCACTGTTTCATAACATATCACATAATAAATTAG 339 0.413 MAANGEKLAMGIDLGTTYSCVAVWQHDRVEIIANDQGNRITPSYVAFTDTQRMIGDAALNQAATNPTNTIFGKTSNLNYSFFCQLPQLLLCQNLYITVVFSMHCFITYHIIN. 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00233 112 Gene3D - 2 98 - -
Seca1g00233 112 PANTHER HEAT SHOCK PROTEIN 70KDA 9 73 IPR013126 GO:0005524|GO:0140662
Seca1g00233 112 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Seca1g00233 112 PRINTS 70kDa heat shock protein signature 8 21 - -
Seca1g00233 112 PRINTS 70kDa heat shock protein signature 36 48 - -
Seca1g00233 112 PRINTS 70kDa heat shock protein signature 58 66 - -
Seca1g00233 112 FunFam heat shock 70 kDa protein-like 3 103 - -
Seca1g00233 112 SUPERFAMILY Actin-like ATPase domain 8 107 IPR043129 -
Seca1g00233 112 Pfam Hsp70 protein 10 72 IPR013126 GO:0005524|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00233 Seca-Chr1 2739056 2739394 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00233 1 71 Calmodulin-binding Proteins AT3G12580 80.282 8.45e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00233 K03283 - gmx:100783822 125.561