Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00225 ATGTCAGAAGCTAGTCCTTATTCCATTGATATTGCAAAAATGAGAAATGCTCTTCTACCATCAGTTTCTCCACGGCTTCAATATGGAAATGATGGAGATCAATTGGAAATTTTAGAAGGTTCCATGCAGATGAACGACTTAACAGGTCATTTTGTTAGTAATGACTTCAATATGGAGTCTAGAGAATTCAACAGTGACAACCAATTGAGCAAAGGAGTCTATACAGAGCCAAATCTGTCTCAGTCTCTGATTTATAACAACAATCATCAACCAGGTAGTCTATATGCTGGCAAAGACATTTCTCTGCAATCATTGTTACTTGACAAGGACCCTTCAGTTTCTCAATATGAAGGAGTCAGTGGAAATGCCAGAAAACGTCCATTTGAGTATGTTGACAACATATCCTTGTGGAAAATGATGAAAAAGAAATCAAAAAGCAAGATCACATTCTTGGAACCGAAATGGAATCATGTAGTAGAAGAAGCTTCAGAGACAACCCCTCAACAAAACTTGTATGTGCCTATGAGGAGAAATCAGAAGCTTAGTGATAAAGTAACAACTCTACAAAAGTTGGTTTCACCTTTTGGCAAGACTGACACTGCCTCAGTTCTTCATGAGGCTTCTCTTCATATCAAACTTCTTCAAGCACAAATCCAGACTTTGTTTCAGATGATGAGTTTCTCTTATATTAGTACTGTTAAAGCTCCTTATACTCAGGAATGTGGGGACAAATTGCAGGTTGACCTAAAGAGCAGGGGACTATGTTTGGTTCCCATATCAATCACACAGAAAGTAACAATAGAAGACCAGATTCATCATGCTTCTGCCTCAAGAACTATTCTGCGCTGA 849 0.3828 MSEASPYSIDIAKMRNALLPSVSPRLQYGNDGDQLEILEGSMQMNDLTGHFVSNDFNMESREFNSDNQLSKGVYTEPNLSQSLIYNNNHQPGSLYAGKDISLQSLLLDKDPSVSQYEGVSGNARKRPFEYVDNISLWKMMKKKSKSKITFLEPKWNHVVEEASETTPQQNLYVPMRRNQKLSDKVTTLQKLVSPFGKTDTASVLHEASLHIKLLQAQIQTLFQMMSFSYISTVKAPYTQECGDKLQVDLKSRGLCLVPISITQKVTIEDQIHHASASRTILR. 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00225 282 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 176 225 IPR036638 GO:0046983
Seca1g00225 282 CDD bHLH_AtbHLH_like 176 221 IPR045239 -
Seca1g00225 282 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Seca1g00225 282 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00225 Seca-Chr1 2595642 2600692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00225 177 261 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 52.222 1.60e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00225 - - ccaj:109812405 376.326