Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca1g00224 ATGGTGAACATGATGGAATGGCAGAAGCAGCGTTGGCATCCAAACGCAAACGCGGAAATGATGTATGTCAAGGTCATGACCGACGAACAACTCGAGACTCTACGGAAACAAATCGCGGTTTACGCAACCATCTGCGAACAACTCATCGAGATGCACAAATCACTCTCTGCTCACCAAGATCTAGCAGGGGTTAGGCTTGGTGGAATGTACTGTGACCCATTGATGGCATCTGGTGGCCACAAAATAAGTTCAAGGCAGAGGTGGACTCCAACACCTGTGCAGCTTCAGATTCTGGAGCGGATATTTGATGCTGGGACTGGGACTCCTAGCAAGGAAAAGATCAAGGAGATAACTGCTGAGCTTAGCCAGCATGGTCAAATTTCTGAGACTAATGTGTATAATTGGTTCCAGAATAGGCGTGCTAGGTCCAAGAGGAAACAGCAGAGTGTGGCGCCTAGTGGTGTTAATGCTGAGTCGGAAGTGGAGACTGAGGTTGATTCTAAGGATAAGAAGACTAAACCAGATGAGTTTGTGTCCCAGCCGAGTGTGAATGCTGGGCCTGCTGAAAATTTGTGCTTCCAGAACCCTGAAGTGTGCTCTGATTTGCAGTACTTGAATCCAGAGTCAGATGGCAGTCTAAGATCCACCAGAAGTTTTGATCATGTGCCTGTCTTCGATGGGATGCTATCAAACTCAAGGAGCGACTATCTTACTGGAAAAATGGAAGCTCCTGAGAGCTACAACTTATACCAGCCAGGAGGCGACTACAACATGGCAGGTTAA 783 0.4751 MVNMMEWQKQRWHPNANAEMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHKSLSAHQDLAGVRLGGMYCDPLMASGGHKISSRQRWTPTPVQLQILERIFDAGTGTPSKEKIKEITAELSQHGQISETNVYNWFQNRRARSKRKQQSVAPSGVNAESEVETEVDSKDKKTKPDEFVSQPSVNAGPAENLCFQNPEVCSDLQYLNPESDGSLRSTRSFDHVPVFDGMLSNSRSDYLTGKMEAPESYNLYQPGGDYNMAG. 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca1g00224 260 MobiDBLite consensus disorder prediction 143 186 - -
Seca1g00224 260 FunFam WUSCHEL-related homeobox 11 85 151 - -
Seca1g00224 260 PANTHER WUSCHEL-RELATED HOMEOBOX 13 5 258 IPR044559 GO:0003700
Seca1g00224 260 SMART HOX_1 83 150 IPR001356 GO:0003677
Seca1g00224 260 CDD homeodomain 85 147 IPR001356 GO:0003677
Seca1g00224 260 Gene3D - 87 151 - -
Seca1g00224 260 SUPERFAMILY Homeodomain-like 83 148 IPR009057 -
Seca1g00224 260 MobiDBLite consensus disorder prediction 161 176 - -
Seca1g00224 260 Pfam Homeodomain 85 145 IPR001356 GO:0003677
Seca1g00224 260 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca1g00224 Seca-Chr1 2591818 2595007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca1g00224 4 260 Wox Gene Family AT4G35550 52.595 2.48e-92 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca1g00224 Homeodomain 3.6e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca1g00224 - - gmx:100784355 432.565